FMO02754.5prime Sequence
1210 bp (1038 high quality bases) assembled on 2008-05-23
> FMO02754.5prime
CAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATGTGTACTTC
GCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTCTACATATC
CATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGCCAAGGCGC
AGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACTACAGCAAC
AGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATATACTCGGC
GTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCATGGATGACG
AGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGCCGGAGCGT
CTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGACTTCTCCAG
CCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGTGCACAACA
ACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCTCCCGCCGC
TCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCGTCCAATCG
ACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCCCCGCAACA
TGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGTGTGTGGGT
CCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAGTTCGTGGA
GATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTACGTAGAGG
CCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGATTGGCCTG
GCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGATGTCCACTA
CGCCGGAATCGTGGCGCAGTTCAACGACTGTGTGTACCGTGCCAATGTGG
TGGACACTTTCGATACGCGGCAGTGGTGGACCTGGACGAGTGGTGATGCC
GCTGAAGCACACACCTTGGCGACTACTGCGCCAGTGCGACGAGGGCCGCA
CCGCGGGCTTCGTCTTCGCAACGTATTCTTCACCGGCGAGACAGTAACGA
CACTTCACCCCCCAGCCCGTTCTAACAGACTGCCTCTACACCAGTCGAGG
TGCGCGACGCTGGAGTGCCGCCGGCTTCTATACAAGACAAGGTGTGTAAG
CAGGCAATTGGAATGGCACCACCTACAGGTTTACCGCGCCCACGGGAATA
CCGCGCAGAT
FMO02754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12910-RC | 2487 | CG12910-RC | 847..2001 | 6..1144 | 5210 | 97.8 | Plus |
| CG12910-RA | 1702 | CG12910-RA | 62..1216 | 6..1144 | 5210 | 97.8 | Plus |
| CG12910-RB | 1705 | CG12910-RB | 176..1219 | 117..1144 | 4655 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10268143..10268619 | 584..1053 | 2035 | 98.5 | Plus |
| 2R | 25286936 | 2R | 10267734..10268042 | 278..586 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 10267100..10267264 | 117..281 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 10266917..10267027 | 6..116 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:21 has no hits.
FMO02754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:43 Download gff for
FMO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-RA | 46..1181 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:28 Download gff for
FMO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-RA | 59..1194 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:12 Download gff for
FMO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-RA | 59..1194 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:12 Download gff for
FMO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10266914..10267027 | 1..116 | 97 | -> | Plus |
| 2R | 10267100..10267262 | 117..279 | 100 | -> | Plus |
| 2R | 10267736..10268042 | 280..586 | 100 | -> | Plus |
| 2R | 10268146..10268626 | 587..1058 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:28 Download gff for
FMO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6154419..6154532 | 1..116 | 97 | -> | Plus |
| arm_2R | 6154605..6154767 | 117..279 | 100 | -> | Plus |
| arm_2R | 6155241..6155547 | 280..586 | 100 | -> | Plus |
| arm_2R | 6155651..6156131 | 587..1058 | 98 | -> | Plus |
