FMO02760.5prime Sequence
1201 bp (1032 high quality bases) assembled on 2008-05-23
> FMO02760.5prime
CAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACGCCTATCCC
CGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCCGCAGTTAC
AATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGAGGTCCTCA
ACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACACCACTCGT
GATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAATCTGGCGTG
CAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACACACACTTGA
GGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATGGCGAGCCC
CTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCGCCCAATAA
GAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGCTACTCACT
GCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGCGCAAATGG
ACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTACAAACGCAG
CGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCACCTGGAAG
TGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGAGCTTCTCC
ATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTGAAGCTATC
GCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTTCGCCAAGA
CGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCAAAAGTGAA
ATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATGCGAGGAAA
CAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCACGCGATACC
GAAAAGATCTTTCAGATCGCGAGCGCGGAATGCCGGGATATTCTTCAGCT
ACGAGCTCTCGCCACTGATGGTGAAATATGCGAAAGACACAGCTCATTTG
GTCACTTCGCCACGATGCTGTCATCATCGGAGGCGTGTTCACGGTGCGCA
TTCTCCGCGTGCTGCTGAACAACTCGTGGGAGCATTCACGAAACTGAAGT
CGGCAAGCTAAGGCAGCCTTCTAGACATTCGTTGGCGCGGGCAGGTAATG
CTTAACTTATCGTAGCTAATCATATCACACAGCTAAGGAGAAATCGTTCT
G
FMO02760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7011-RA | 1343 | CG7011-RA | 134..1248 | 9..1109 | 5205 | 98.4 | Plus |
| Prp31-RA | 1862 | CG6876-RA | 1695..1826 | 1109..990 | 355 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15162987..15163341 | 448..94 | 1775 | 100 | Minus |
| 3L | 28110227 | 3L | 15162500..15162837 | 786..449 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 15161176..15161373 | 982..786 | 940 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15163408..15163495 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:25:56 has no hits.
FMO02760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:27 Download gff for
FMO02760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 126..1247 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:22 Download gff for
FMO02760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 130..1251 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:29 Download gff for
FMO02760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 130..1251 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:29 Download gff for
FMO02760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15161165..15161372 | 787..992 | 98 | <- | Minus |
| 3L | 15162500..15162837 | 449..786 | 100 | <- | Minus |
| 3L | 15162987..15163338 | 97..448 | 100 | <- | Minus |
| 3L | 15163408..15163499 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:22 Download gff for
FMO02760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15154265..15154472 | 787..992 | 98 | <- | Minus |
| arm_3L | 15155600..15155937 | 449..786 | 100 | <- | Minus |
| arm_3L | 15156087..15156438 | 97..448 | 100 | <- | Minus |
| arm_3L | 15156508..15156599 | 1..96 | 95 | | Minus |
