FMO02766.5prime Sequence
1227 bp (1080 high quality bases) assembled on 2008-05-23
> FMO02766.5prime
CAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGGAGGAAATC
GACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAGACGAGCGA
CCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAGCGTACAGG
AGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTGGTGGAAAC
GGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGGAAGCCCCA
AGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCAACAGCAGC
AGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACGATGCGGCC
ACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTGCGGCGGCC
CGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACCGAAGCAGC
CCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGGCCAGGCTG
CGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCGGCCACTCC
CATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTCCGCGGCGC
CGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCATCAACAAC
AATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCGGCACCGAA
AATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTACTTCCCGG
GACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATAACCCGCAA
CATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCGCAGCATTT
CAATCAACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACTGGGCGGTG
TTGGGATGCAAGCTCAGCGCCGCCCCAGTCGTCGCCCAATCCGCAGCAGA
GCTGGTCACCTGGTGTGGGGCGGATCAGTGTCCGCCGCCTCCTGGCGCCA
CAGTCGCTGCAGTCGCCACAGCAGCACCAGCAGCAGCATCAGCAGCAGCA
CCAGCATCAGCAGCAGCATCAGATCATCAGGCGCAGCAGCTCGGCCAGCA
TCGCATCGGTTCAACGAACTATTCCTGGGCCTGCCCAGGGGTCCCTGTCG
AAGTGTCCATGCATCCAATGGCCGGCAAGCTTCTAGACATTCTGTTGGGC
GCGGGCCCAGATAGAGGGTGTCTTATA
FMO02766.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31908-RC | 2135 | CG31908-RC | 613..1756 | 9..1149 | 5465 | 98.9 | Plus |
| CG31908-RB | 1821 | CG31908-RB | 299..1442 | 9..1149 | 5465 | 98.9 | Plus |
| CG31908-RA | 2033 | CG31908-RA | 511..1654 | 9..1149 | 5465 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7025208..7025818 | 1149..542 | 2660 | 97.5 | Minus |
| 2L | 23513712 | 2L | 7026156..7026636 | 542..62 | 2405 | 100 | Minus |
| 2L | 23513712 | 2L | 7026724..7026777 | 62..9 | 270 | 100 | Minus |
| X | 23542271 | X | 10618460..10618520 | 1065..1005 | 185 | 86.9 | Minus |
Blast to na_te.dros performed 2014-11-28 21:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 624..858 | 146 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 793..837 | 134 | 79.2 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 274..349 | 125 | 64.5 | Plus |
FMO02766.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:49 Download gff for
FMO02766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RB | 335..1501 | 1..1160 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:21 Download gff for
FMO02766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RA | 510..1676 | 1..1160 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:29 Download gff for
FMO02766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RA | 501..1667 | 1..1160 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:29 Download gff for
FMO02766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7025195..7025818 | 542..1160 | 97 | <- | Minus |
| 2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
| 2L | 7026724..7026785 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:21 Download gff for
FMO02766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7025195..7025818 | 542..1160 | 97 | <- | Minus |
| arm_2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
| arm_2L | 7026724..7026785 | 1..62 | 93 | | Minus |
