FMO02768.5prime Sequence
1204 bp (1024 high quality bases) assembled on 2008-05-23
> FMO02768.5prime
CAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCTATAAGCTC
GGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGATCTGCCAGA
GCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCACCGCCGGCG
ATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCTCCAATACC
ACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATTCGCACCGC
CTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAAGTGCCAGA
TGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTTCGTTCCTC
AAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCGCCCAAACA
GGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTGGAGCGAGG
AGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGATCGGCCAA
GATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTCGAGATTCT
CGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACATGAAAGTGG
AGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATATCATTGAT
TCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTGATGGTCGA
CAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGATTTGGATA
CCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTGATATTGTG
CCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCTTCCGATAT
ATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGGCCTTAATG
TGGAACTTCGCGTGAGTTCGGCCACAGGGACCGGAGAAACGTTGCGCATT
GTCGCGATATGATCGGTGATGAGCAACTTGATCTTTGTGCCGTCGCGGCG
ATCATGACTGGGTCAGTCGTTTCCGCAGCACACTTTCGTTATCATTGTTC
CGCCCGTCAAATCGGACAAATGCCAGGTGGACGTGTGTCCAGCCTTGAAT
CTGCCATCGGCTGGCCTGGTCCCAGTTTCTATCCAGCACTGCTTCGCATG
CCGACCCATTCCTGGGCGTTACACACTCATGGGTCTGGTGCGAATTAGTC
TCGG
FMO02768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-RA | 1826 | CG3989-RA | 241..1394 | 5..1136 | 5045 | 97.1 | Plus |
| ade5-RB | 2547 | CG3989-RB | 241..1391 | 5..1136 | 4990 | 96.8 | Plus |
| CG40801-RB | 429 | CG40801-RB | 58..403 | 36..385 | 1530 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12758355..12758855 | 989..495 | 2210 | 98.4 | Minus |
| X | 23542271 | X | 12759711..12759915 | 238..34 | 1025 | 100 | Minus |
| Y | 3667352 | Y | 3231313..3231515 | 36..238 | 925 | 97 | Plus |
| Y | 3667352 | Y | 3059275..3059477 | 238..36 | 925 | 97 | Minus |
| Y | 3667352 | Y | 3267332..3267534 | 238..36 | 910 | 96.6 | Minus |
| U | 3151297 | U | 2460018..2460220 | 36..238 | 910 | 96.6 | Plus |
| X | 23542271 | X | 12759460..12759610 | 385..235 | 755 | 100 | Minus |
| Y | 3667352 | Y | 3267089..3267236 | 385..234 | 620 | 95.4 | Minus |
| X | 23542271 | X | 12758922..12759038 | 496..380 | 585 | 100 | Minus |
| Y | 3667352 | Y | 3059062..3059204 | 385..239 | 580 | 94.6 | Minus |
| Y | 3667352 | Y | 3091728..3091870 | 178..36 | 565 | 93 | Minus |
| Y | 3667352 | Y | 3205824..3205966 | 36..178 | 565 | 93 | Plus |
| Y | 3667352 | Y | 3231586..3231711 | 239..368 | 510 | 94.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 1485..1524 | 304..265 | 110 | 75 | Minus |
FMO02768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:52 Download gff for
FMO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3989-RA | 239..1380 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:16 Download gff for
FMO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RA | 238..1379 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:29 Download gff for
FMO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RA | 238..1379 | 1..1124 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:29 Download gff for
FMO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12758207..12758854 | 496..1124 | 95 | <- | Minus |
| X | 12758923..12759035 | 383..495 | 100 | <- | Minus |
| X | 12759463..12759607 | 238..382 | 100 | <- | Minus |
| X | 12759712..12759915 | 34..237 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:16 Download gff for
FMO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12652956..12653068 | 383..495 | 100 | <- | Minus |
| arm_X | 12653496..12653640 | 238..382 | 100 | <- | Minus |
| arm_X | 12652240..12652887 | 496..1124 | 95 | <- | Minus |
| arm_X | 12653745..12653948 | 34..237 | 100 | <- | Minus |
