FMO02770.5prime Sequence
1215 bp (980 high quality bases) assembled on 2008-05-23
> FMO02770.5prime
CAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGGCTGCCAAG
CGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATCAACCAGAC
CCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGCCGGTCTTA
AGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCGCGTCCTCC
TCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAACTGCGGTGT
GCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGGTTCCGGCT
TCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCGGTGCCAAG
ATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCTTTCATTGC
CCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAATCTGGAGG
ATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGCCCATGGCT
CTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGGGAGCGTGT
GGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGGTCAGAAGG
AGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGGTCAAGGGA
AAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAGACCACCAT
CGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGACGGCGTTGTGAC
TGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAGTGATCGTGG
CCTCCGAGGAGGCGCTTAATGAGTACAACCTGAAGCCTCTGGCCCGTCTA
GTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGGCATTGGCCC
AGTACTCGCCATTCAGACGTCTGAGTTTCCGGCAGAAACTGGAGGATATT
GATCTGATTGAGATCACGAGCTTTGCTGCCAGACATGGGCTTGCGCGATG
CCCTGAAGTTGGATACCTCCAAACTGAATTGTGACCGGAGGCGCATCGCC
TTGGGCCATCCTTGGGTGCCCATGGGCTCTCGCATCCCTGGTCATCTGTT
TCTGAATGCCACGCCAAGACCTAAAGTTACGTAACTGGAAATCCCGTCAT
GGTGGTCCAGCATCCCTCTCTCTGAGCTGTCCGGTTTCTTAGTACCTATC
TTTTGTGTGACGTCG
FMO02770.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 96..1200 | 9..1102 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916051..9916970 | 194..1102 | 3815 | 97.1 | Plus |
2L | 23513712 | 2L | 9915621..9915791 | 24..194 | 855 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 465..510 | 113 | 71.7 | Plus |
FMO02770.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:40 Download gff for
FMO02770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4600-RA | 94..1202 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:09 Download gff for
FMO02770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1204 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:56 Download gff for
FMO02770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1204 | 9..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:56 Download gff for
FMO02770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9915348..9915366 | 9..27 | 100 | -> | Plus |
2L | 9915625..9915791 | 28..194 | 100 | -> | Plus |
2L | 9916052..9916974 | 195..1105 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:09 Download gff for
FMO02770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9915348..9915366 | 9..27 | 100 | -> | Plus |
arm_2L | 9915625..9915791 | 28..194 | 100 | -> | Plus |
arm_2L | 9916052..9916974 | 195..1105 | 97 | -> | Plus |