FMO02771.5prime Sequence
1198 bp (765 high quality bases) assembled on 2008-05-23
> FMO02771.5prime
CAATCGACATGAGTGTCGCTGCAATGACTATGGACGATCAAAGACCCTGT
ATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAAAACCTAAA
TATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCCCGCCTCCC
CAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATCCGCATCCG
CACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
CTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGCAGCTGTTG
CAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCGAAGATGAG
ATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAATGCGCGGA
CGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAACAAGGAGC
AAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGGCCCAACAG
GCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCTGCAGTCAA
TCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAAGGCCAAGC
TGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGCCGGACTCT
AATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTATCAGGAGAA
CGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAAGCTGGAGA
CCGAACTGGCCATGCATAAGAGCTTCAGCGAACAGGTCAGAAATCGCAGT
CGGAGTTGGACGACTTCCTGCAGAGCTGGACGAGGATGTGGAGGGCATGC
ACAGCACCATTCTGTTTTTGCAGCAAGAACTAATACACACGCGATCGCAT
ACAATCGCTTGAGATGAGACGACCAGTTGATACAGACCATCATGATGAGT
TGTGCTCAGCGGCTGCCACAACGAGGCCACACACGACGATAATAAGCTAG
ATACATTCACGACGACGCTTGCATGGCGAATAACCAACGATCGAATTGTT
ACGATGGGAAATCACACGACAGATCGCGCGTGCACAGATATCCACTGCGA
TGAATGCATCATGTGACGAAATGACCTGCGATTAGCCTGAATCGAACGCT
ACCAGGAGACAGAGTTCCTTTCCACGGTTAGTAGTGTAGTCCCATTAC
FMO02771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RA | 2567 | CG6315-RA | 426..1538 | 9..1097 | 4655 | 96 | Plus |
| fl(2)d-RD | 2485 | CG6315-RD | 680..1456 | 345..1097 | 2975 | 94.2 | Plus |
| fl(2)d-RC | 2435 | CG6315-RC | 630..1406 | 345..1097 | 2975 | 94.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13823792..13824128 | 345..9 | 1685 | 100 | Minus |
| 2R | 25286936 | 2R | 13821036..13821370 | 803..470 | 1580 | 98.8 | Minus |
| 2R | 25286936 | 2R | 13821433..13821563 | 470..340 | 640 | 99.2 | Minus |
| 2R | 25286936 | 2R | 13820724..13820970 | 1035..803 | 405 | 87 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:27 has no hits.
FMO02771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:41 Download gff for
FMO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-RA | 421..1496 | 1..1060 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:03 Download gff for
FMO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 420..1495 | 1..1060 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:20 Download gff for
FMO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 420..1495 | 1..1060 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:20 Download gff for
FMO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13821036..13821369 | 471..803 | 98 | <- | Minus |
| 2R | 13821433..13821557 | 346..470 | 100 | <- | Minus |
| 2R | 13823792..13824132 | 1..345 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:03 Download gff for
FMO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9708541..9708874 | 471..803 | 98 | <- | Minus |
| arm_2R | 9708938..9709062 | 346..470 | 100 | <- | Minus |
| arm_2R | 9711297..9711637 | 1..345 | 98 | | Minus |
