FMO02772.5prime Sequence
1155 bp (1001 high quality bases) assembled on 2008-05-23
> FMO02772.5prime
CAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCGTGTACACG
GAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCGGCAGTGTT
CAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCAGCTGCTCC
GCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTGGTCACCAG
ACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGTATTCCCCG
TGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTTCGGCAACA
TGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCCGTCGCTGG
CACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTGTCGGCCAT
CGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACATGTCATCG
ACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGCAAAAGGTC
CAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAGATCTGGGC
TGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGGCCGTGGTA
CCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGGTGGTCTAC
GACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCCGGCATTGA
GACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCCCGGCGGTC
ATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCCGCCTGACG
ATCTGTTCGGCACCTGAAAGAGCCGTCCACCTTGAAGAAGGGCTACACCT
GCCCCAGCCCAAGATGGCCACACCGATCTGTCGCGTCTGCTCAAGTCTGA
GAGATCCGCAAGGTGTTGCGCGATCCCCGCAAGCGTGGTGTTCGCAGCGT
GCGCCGCCTGATCCCCTTGACCAACGTGCCGCCAGCTGATCAAGCTTTAA
CCTCTATGCCGAGTCTCAAGGCGTCGTGGCGCCTCTCCCGCCGAGAACGC
ATGTGGCCAAGGGCTGCCAAGGCAAAAGCCACGTCAACTGGCCAGTCCCA
CTTCGCAGGAGTCACCAGGGGTGCGAAATCGCCCTAACGCTGGTCGCCCC
CCGAG
FMO02772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL4-RA | 1400 | CG5502-RA | 97..1208 | 9..1106 | 4860 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27923369..27923743 | 192..566 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 27924138..27924592 | 562..1013 | 1815 | 96.7 | Plus |
| 3R | 32079331 | 3R | 27923124..27923307 | 11..194 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:43:51 has no hits.
FMO02772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:43 Download gff for
FMO02772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5502-RA | 117..1184 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:14 Download gff for
FMO02772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL4-RA | 89..1156 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:22 Download gff for
FMO02772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL4-RA | 89..1156 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:22 Download gff for
FMO02772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27923122..27923305 | 8..192 | 99 | -> | Plus |
| 3R | 27923370..27923740 | 193..563 | 100 | -> | Plus |
| 3R | 27924140..27924592 | 564..1013 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:14 Download gff for
FMO02772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23748844..23749027 | 8..192 | 99 | -> | Plus |
| arm_3R | 23749092..23749462 | 193..563 | 100 | -> | Plus |
| arm_3R | 23749862..23750314 | 564..1013 | 97 | -> | Plus |
