FMO02774.5prime Sequence
1225 bp (1024 high quality bases) assembled on 2008-05-23
> FMO02774.5prime
CAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCGCCATCGAG
GTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCCAACAAGGT
CAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCCTTGGGTTT
TGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATGAGCAGGTT
AACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACCAATGCGGC
CACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGAGAATCGCG
CCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCGTTGCCGCC
GATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTACTCGAACCC
CACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTTTACGACCG
TTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGGACTTCAAG
AACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTGATCATTCT
GCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCAGGAGCAGT
GGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCCCGCTGTTC
GACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGCGATGCCTG
GGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCATCTGCCAGT
CGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCAATCTGGCT
GTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCTCAGCTGAC
GCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGGAGCTCGCA
TCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAGGAGTGATGGCCT
CCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCGTACAGCTTTGCGG
GACAAGCTGGTTGCCTTGGCACCCCCGCACTGGGATCCCATTGTCAACCA
GATCGCATTGTTCTCTACCCGTCTGAACGGAAGCCAGGTTCCGGTGGCTG
ATTGACGTACCCATTACCTGCTGAAAACGACGCATCACATGAGTGCCTGA
ATAAGGCACGTTGAATTGTGCAGCAATTCTATGCCTGTCACGGATCGGAA
AAGGGCACTAGTGCTTCTTTGTACA
FMO02774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got1-RA | 1683 | CG8430-RA | 98..1271 | 9..1166 | 5280 | 97.6 | Plus |
| Got1-RB | 1682 | CG8430-RB | 97..1270 | 9..1166 | 5280 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16140634..16141403 | 300..1065 | 3595 | 98.7 | Plus |
| 2R | 25286936 | 2R | 16140329..16140438 | 117..226 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 16138776..16138884 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 16140499..16140574 | 225..300 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:31 has no hits.
FMO02774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:56 Download gff for
FMO02774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8430-RA | 92..1151 | 1..1055 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:30 Download gff for
FMO02774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..1147 | 1..1055 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:39 Download gff for
FMO02774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..1147 | 1..1055 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:39 Download gff for
FMO02774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16138767..16138884 | 1..117 | 96 | -> | Plus |
| 2R | 16140330..16140437 | 118..225 | 100 | -> | Plus |
| 2R | 16140500..16140573 | 226..299 | 100 | -> | Plus |
| 2R | 16140634..16141393 | 300..1055 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:30 Download gff for
FMO02774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12026272..12026389 | 1..117 | 96 | -> | Plus |
| arm_2R | 12027835..12027942 | 118..225 | 100 | -> | Plus |
| arm_2R | 12028005..12028078 | 226..299 | 100 | -> | Plus |
| arm_2R | 12028139..12028898 | 300..1055 | 99 | == | Plus |
