FMO02776.5prime Sequence
1231 bp (846 high quality bases) assembled on 2008-05-23
> FMO02776.5prime
CAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGGATGAGGAG
CAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAGAAGGATGT
CAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGATTTCCTCC
TGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCTAGCATCCC
TCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGAACTGGGCATGGACAT
CCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTTCGTTCTGG
CCACGCTGCAACAGCTGGAACCGTCGGACAACAACACCTGCCACGTCCTG
GTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAGGAGTATGA
GCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTTCTTTGGCG
GAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCACCCCGCAT
ATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGCAACAAGAA
ACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTGCGACAAGA
TGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTTTCCGTAGC
ACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTGAGCAAGGA
CATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGAGGTCTACG
TCTACTATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGCACTACGTC
AATCTGAAAGAGAACGAGAAAACAAGAAACTGTTCGAACTGCTCGACGTG
CTCGAGTTCAATCAGTGGTCATCTTTGTGAAGTCTGTGCAACGTTGCGTG
CTCTGTCGCAGCTGCTGACAGAACAAACCTTCCCCGCCATCGGCATCCAT
CGTGGGATGACCCAGGAGAGCGTCTGAATCGCTACCAGCAATCGATGTAC
TTCAGTAGCGCATCCGGTGGCCATCAATCTCTTTGGCGCGCGCTTGAACA
TCGAGCGTAGTGAACATCTGTCAAACTACGACATGCCGAGGGATTCTGAC
ACTCTATCTTGCACTGCCGTGGCCCTGGCGTTGCCTCGGGCACCAACGGA
ACTGGCATCATCGTTCCGACGAGATCATAGCCGAAGACATTAGAGGACAG
GAACTGTCTTCCAGTGTGATGACTCACAGTT
FMO02776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hel25E-RB | 1657 | CG7269-RB | 78..1229 | 9..1157 | 4875 | 95.8 | Plus |
| Hel25E-RA | 1596 | CG7269-RA | 188..1339 | 9..1157 | 4875 | 95.8 | Plus |
| Hel25E-RC | 1760 | CG7269-RC | 181..1332 | 9..1157 | 4875 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5541430..5541657 | 434..207 | 1095 | 98.7 | Minus |
| 2L | 23513712 | 2L | 5541723..5541921 | 207..9 | 980 | 99.5 | Minus |
| 2L | 23513712 | 2L | 5541153..5541338 | 615..430 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 5540972..5541091 | 734..615 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 5540169..5540300 | 865..735 | 565 | 97 | Minus |
| 2L | 23513712 | 2L | 5539868..5540109 | 1102..865 | 555 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:03 has no hits.
FMO02776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:59 Download gff for
FMO02776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7269-RC | 169..1285 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:49 Download gff for
FMO02776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RC | 173..1289 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:02 Download gff for
FMO02776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RC | 173..1289 | 1..1113 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:02 Download gff for
FMO02776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5541153..5541336 | 432..615 | 100 | <- | Minus |
| 2L | 5541433..5541656 | 208..431 | 98 | <- | Minus |
| 2L | 5541723..5541926 | 1..207 | 97 | | Minus |
| 2L | 5540169..5540300 | 735..865 | 96 | <- | Minus |
| 2L | 5540972..5541090 | 616..734 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:49 Download gff for
FMO02776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5540972..5541090 | 616..734 | 100 | <- | Minus |
| arm_2L | 5541153..5541336 | 432..615 | 100 | <- | Minus |
| arm_2L | 5541433..5541656 | 208..431 | 98 | <- | Minus |
| arm_2L | 5540169..5540300 | 735..865 | 96 | <- | Minus |
| arm_2L | 5541723..5541926 | 1..207 | 97 | | Minus |
