FMO02780.5prime Sequence
1207 bp (1004 high quality bases) assembled on 2008-05-23
> FMO02780.5prime
CAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCATTTGTCGTG
GGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTGGAGCTGAC
GCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCATCTGGGTCG
TGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGGTGCCCGAG
TACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTGGGCTCCGT
GAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGTACGTGGCT
TTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCACGGACTAC
AATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTGGCGGAGGT
CAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATCGTCTTCCG
GCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCACCGAGGAC
AACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTGGTGGAATT
CTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGAATGGGCCA
AGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCCTGGATGCC
ACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGGTATCCTAC
CATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGCCCAGGAGT
ATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGGGCCAGTGACAAG
CATGTGGCCATGTGCCAGCACCCGAACTCATCGAGATTATCAATGAATCG
ACTTTTGAAACTGCCTGCGAAGGAAAGCCATTGTGCGTCGTGTCCGTTCT
GCCACACATTCTCGACTGCGATGCCAAGTGCCGCAACAGTTCCTCGACAC
ATTGCGCACCCTGGGCGAGAGTTCAAGCAGAGCATTGGGGCTGGGCCTGG
GCAGAAGTGACAGCAGTTGGCCTGGAAAAGTCCCTCGAGTGGGCGGATTC
GGCTTATCCGGGCCATGCCTGTGTCCACTTCAGGAAATGAATTCTTCGTG
CTCAGGGCTTCTTTCTCAGGACGGCATCACAGAGTTCTGCGAAACTCCTA
TGGAATGTCCACCGGCCGGTTTCGGGACCAAAAGACCGGCGATTGTGTTG
TCCGCTG
FMO02780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1323 | 9..1137 | 5140 | 97.5 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1323 | 9..1137 | 5140 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355430..16356471 | 1054..21 | 4770 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:43 has no hits.
FMO02780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:50:04 Download gff for
FMO02780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-RA | 204..1341 | 2..1129 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:35 Download gff for
FMO02780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1315 | 2..1129 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:19 Download gff for
FMO02780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1315 | 2..1129 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:19 Download gff for
FMO02780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355352..16356470 | 22..1129 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:35 Download gff for
FMO02780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355352..16356470 | 22..1129 | 97 | <- | Minus |
