FMO02781.5prime Sequence
1183 bp (1011 high quality bases) assembled on 2008-05-23
> FMO02781.5prime
CAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGGAAACGCCC
GCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCAGCGGCCCC
GCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGTGGAGAAGG
CTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAAAGCAGGAC
AAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTGGCAGCACC
CGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAATGTGCACA
AGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCTCGCGCACC
CCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAGACCTGGCT
GCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGATGCGTTTCC
GCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGGAGGAAATC
GCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATACGAGAAGTA
CCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTACGCCACGA
TTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACTGGCGCGCC
AAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTGCAGCACGC
CCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCA
CCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGGCGCACGGC
ATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAGGACGACCT
GAAGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCTTCGGCGACGA
GCCCACCACCCTGGGATGTGTGGCCTTCCCTGTCCTCTCGCAGCTCCACT
ATCTGTCCAGACATTGCGTATCCGCTGCCGCGACTACATGACCGAGAGTG
CCCCACTTGATGGCACGTATCTCGCATGAGGAAATGCTCCCCGACTGGAA
CGAATCTGCACGAGCTGGACCTCAATGCCCACATCCAGCCGAGCCGAGAC
AGAGCCAGAGGGTGGCGGACGGGAATCCAACGAACCGGATGCCTGAGGCC
AACAGATCGAAAGGAATGTGGAGAAGGACACAG
FMO02781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-RA | 3988 | CG4609-RA | 406..1498 | 4..1084 | 5025 | 98.2 | Plus |
| fax-RC | 3153 | CG4609-RC | 362..1445 | 4..1084 | 4880 | 97.4 | Plus |
| fax-RF | 3218 | CG4609-RF | 58..728 | 426..1084 | 2930 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16411002..16411423 | 425..4 | 2095 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16407021..16407361 | 764..424 | 1705 | 100 | Minus |
| 3L | 28110227 | 3L | 16405514..16405849 | 1084..761 | 960 | 92.6 | Minus |
Blast to na_te.dros performed 2014-11-28 21:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 588..650 | 114 | 66.7 | Plus |
FMO02781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:50:06 Download gff for
FMO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4609-RA | 413..1503 | 1..1078 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:43 Download gff for
FMO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RA | 413..1503 | 1..1078 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:48 Download gff for
FMO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RA | 402..1492 | 1..1078 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:48 Download gff for
FMO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16405505..16405845 | 765..1095 | 93 | <- | Minus |
| 3L | 16407021..16407359 | 426..764 | 100 | <- | Minus |
| 3L | 16411002..16411424 | 1..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:43 Download gff for
FMO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16398605..16398945 | 765..1095 | 93 | <- | Minus |
| arm_3L | 16400121..16400459 | 426..764 | 100 | <- | Minus |
| arm_3L | 16404102..16404524 | 1..425 | 99 | | Minus |
