FMO02783.5prime Sequence
1247 bp (1041 high quality bases) assembled on 2008-05-23
> FMO02783.5prime
CAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGCAGCACCTG
TTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATTCACGTTTT
CCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAAACGCGATT
ACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTCCCGAGGAA
TTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTCGAACAGGA
TTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCATGGCGAATT
TCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGGATGCCGCA
CAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCTTTGGGACT
ACGGGCTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAAGGACAAGG
AGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAGAGTGACCGTG
GAAACCCAGCCCTTTGATCTCGAGGCTTTTATGAATGAGCACAAGCAATT
GCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTTTTTTGCTG
ATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGGCACGGGAT
GTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCGAAGGCATC
AAGCCCAAAAGAAGCTCCTCGCATTACGAAGCGCAAGGCTCTTGAAATCA
ATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCAATCCGCTT
GTCGAGTACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTAAATGTAAT
CTTAAAAGTAGAGCTAGCGCCAATGGACACCAAGAATGATCTCACTGATG
ATGACGAGAGTCATCCACATCTTCGGGCTTTCCCAAGATGGTCTGGCCGA
CAACTAACCAAATTTAATCCAACCGTCGGAAATGTGTATATGAACTTGCA
TCTCAGGACAGTATGCTTCTTCTGAAGATGAGGATGCTTCTTCTAAGAAT
GGCGTATACTTCTTCTAAATAGGAGGATGCTTCTTCTAAAGATGGAGAGT
GCTCCTTCAAAGAATGATAGAGCCCTTAAATATGAAGGAGTGCTCTCTTT
TAAGTGATAGAAATCCTCTCTCTGAAGATGAGGAGGTCACTAGGGAGGCA
TCGCTAAGCATCTCGATATATCCTAATATAATGGAGATTTATATTCG
FMO02783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32756-RB | 2397 | CG32756-RB | 80..1273 | 9..1203 | 5410 | 97.6 | Plus |
| CG32756-RA | 1895 | CG32756-RA | 80..1273 | 9..1203 | 5410 | 97.6 | Plus |
| CG12728-RB | 2374 | CG12728-RB | 78..1183 | 9..1113 | 5070 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5946755..5947229 | 728..1203 | 1530 | 92.7 | Plus |
| X | 23542271 | X | 5943673..5944040 | 728..1094 | 1360 | 94.9 | Plus |
| X | 23542271 | X | 5946457..5946692 | 491..726 | 1180 | 100 | Plus |
| X | 23542271 | X | 5943375..5943610 | 491..726 | 1135 | 98.7 | Plus |
| X | 23542271 | X | 5942903..5943088 | 168..353 | 930 | 100 | Plus |
| X | 23542271 | X | 5945981..5946166 | 168..353 | 930 | 100 | Plus |
| X | 23542271 | X | 5942683..5942841 | 9..167 | 795 | 100 | Plus |
| X | 23542271 | X | 5945761..5945919 | 9..167 | 795 | 100 | Plus |
| X | 23542271 | X | 5946231..5946371 | 352..492 | 705 | 100 | Plus |
| X | 23542271 | X | 5943153..5943290 | 352..489 | 675 | 99.3 | Plus |
| X | 23542271 | X | 5944023..5944103 | 1013..1094 | 210 | 86.6 | Plus |
| X | 23542271 | X | 5944068..5944150 | 1016..1099 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:26 has no hits.
FMO02783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:54 Download gff for
FMO02783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 45..1141 | 1..1094 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:25 Download gff for
FMO02783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 73..1169 | 1..1094 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:08 Download gff for
FMO02783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 73..1169 | 1..1094 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:08 Download gff for
FMO02783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5946233..5946371 | 354..492 | 100 | -> | Plus |
| X | 5946459..5946693 | 493..727 | 99 | -> | Plus |
| X | 5946755..5947125 | 728..1094 | 97 | == | Plus |
| X | 5945754..5945919 | 1..167 | 97 | -> | Plus |
| X | 5945981..5946166 | 168..353 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:25 Download gff for
FMO02783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5840788..5841158 | 728..1094 | 97 | == | Plus |
| arm_X | 5839787..5839952 | 1..167 | 97 | -> | Plus |
| arm_X | 5840014..5840199 | 168..353 | 100 | -> | Plus |
| arm_X | 5840266..5840404 | 354..492 | 100 | -> | Plus |
| arm_X | 5840492..5840726 | 493..727 | 99 | -> | Plus |
