FMO02786.5prime Sequence
1215 bp (1037 high quality bases) assembled on 2008-05-23
> FMO02786.5prime
CAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGGACGACGTG
CAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGTGGATTCAA
GCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGACACCGGGA
TGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGGCGGTGCAG
CTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCATGGAGCTGA
TTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACATGTGTGCC
GGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATAGTGTCAAC
AGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCCTGCGTGGA
GACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTACACCCAAG
TGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTACTCAAATCG
TTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGGATTGCCCT
GAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCTGCGCAAGA
CGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATGACCTCAAC
GAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTGGCCGAACT
AATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAAAAGTGGCG
AGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGTTTGTGAAG
CGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTGGAATACAC
GTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCACCATCTTCC
GGCAAATCGCACGCATTTGGCGCCAAGGATGCCCCACCAGCACTGACTGT
CCTGCGAAATGCCATCATGGGATGAGTTGATTACGGACGAAGGCAACTAC
TGCAGCACTGCGCGCGAGAAACGGACAAGAAGTGCTCCAAGTGCAAGCGT
GCAGTATTGCGATCGCGAATGCAGGGCTGCATGGTCATGCACAAAAAAAA
CCTGTTCCGGCCTCTGTCAATCCAGCCAAGCCAGCCCAGCGCATCCAAGC
AGGAACCATGAACGGCCAAACTGCTCCAGGAAACGGTTCGACTGTGACTG
TGCGGCAACCTTCTC
FMO02786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8003-RB | 1555 | CG8003-RB | 101..1219 | 9..1114 | 5135 | 98.1 | Plus |
| CG8003-RA | 1368 | CG8003-RA | 101..1219 | 9..1114 | 5135 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10661849..10662603 | 215..967 | 3675 | 99.7 | Plus |
| 3L | 28110227 | 3L | 10661575..10661782 | 9..216 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 10662724..10662776 | 1022..1072 | 185 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:44 has no hits.
FMO02786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:26 Download gff for
FMO02786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-RA | 88..1199 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:46 Download gff for
FMO02786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-RA | 92..1203 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:53 Download gff for
FMO02786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-RA | 92..1203 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:53 Download gff for
FMO02786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10661566..10661781 | 1..215 | 98 | -> | Plus |
| 3L | 10661850..10662623 | 216..985 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:46 Download gff for
FMO02786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10654666..10654881 | 1..215 | 98 | -> | Plus |
| arm_3L | 10654950..10655723 | 216..985 | 99 | -> | Plus |
