FMO02787.5prime Sequence
1260 bp (1024 high quality bases) assembled on 2008-05-23
> FMO02787.5prime
TAAAATACGAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGA
GATTATAGAGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAA
AGTTCAATGCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTT
TTCAAGCCATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCG
CACCTTCGATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAG
CCGATGCTCGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGAT
GCCCGCCAACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAAT
ACTTATTGATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCG
GAAAGGGAGTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAAC
CATGCGGACGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGT
TGAACTGGGTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCA
GATCCCATAAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTT
GATAATATGCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTT
AGGGCAAATGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACC
TGAACCGCGGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAA
ATAGATAACAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGA
GCGTCCTTCGCTGACCAACCGACTCGTAGTGGACGCTCAAATAGCACCAA
GGAGCCTCTCGAGCGCCGGCCACCGCGACACAGTAAGCACAAGTAAACTC
CCAGAATCGGCTGCGGTCTCGTCTGTTTGTCGGTAAGAGAGATCCTCACA
TTTCTCATGGCATCTACGCAACGAGAACCGGAGAAAGGCTGTTGGGGCCG
GTGGTGGTAGTGATAGCGATAGCGGTACTGATAAGTGATGTGATGCAGCT
GCCTCATCGAAGAACAGCCGCGTTCGCCATCCCCATGTCCCCTGGTACGT
CGAACACAAAGGATGATTCCGCCTGCCTGGGAGCAATCTGCAAATCAACG
TGAATCACCTGCCGAAAATCTCCAACTATAACCGAACTTCCGCCCAGGTT
ACCAGCCTCGTGGTGGGTGCCTCCCGGACGCCGCGAGATATATTTTCATG
GTACTCAGTG
FMO02787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6961-RA | 1894 | CG6961-RA | 150..1282 | 24..1153 | 5200 | 97.9 | Plus |
| CG18259-RA | 2055 | CG18259-RA | 119..1251 | 24..1153 | 5050 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18787398..18787918 | 625..105 | 2605 | 100 | Minus |
| X | 23542271 | X | 18782713..18783233 | 625..105 | 2530 | 99 | Minus |
| X | 23542271 | X | 18786810..18787341 | 1153..625 | 1975 | 94.4 | Minus |
| X | 23542271 | X | 18782125..18782656 | 1153..625 | 1900 | 93.4 | Minus |
| X | 23542271 | X | 18783296..18783376 | 104..24 | 405 | 100 | Minus |
| X | 23542271 | X | 18787981..18788061 | 104..24 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:58 has no hits.
FMO02787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:27 Download gff for
FMO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-RA | 142..1281 | 18..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:00 Download gff for
FMO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-RA | 147..1286 | 18..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:12 Download gff for
FMO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-RA | 147..1286 | 18..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:12 Download gff for
FMO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18786849..18787340 | 626..1115 | 96 | <- | Minus |
| X | 18787398..18787918 | 105..625 | 100 | <- | Minus |
| X | 18787981..18788064 | 18..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:00 Download gff for
FMO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18680882..18681373 | 626..1115 | 96 | <- | Minus |
| arm_X | 18681431..18681951 | 105..625 | 100 | <- | Minus |
| arm_X | 18682014..18682097 | 18..104 | 96 | | Minus |
