FMO02788.5prime Sequence
813 bp (813 high quality bases) assembled on 2008-05-23
> FMO02788.5prime
AAAATAAAAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATC
AGCAACCGTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCA
TGGCCATTGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCT
CCGCAATGGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGC
GGTGCCCTGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTG
GTCGGACTGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGT
ACTCAATGGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTC
ACGGAGGCCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTAT
TCAGGCCTGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGG
GCATCCGCATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGAT
TGCCTATCATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTA
CAAGGGTTCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCA
TATACCGCACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGC
AATTTGCAATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTA
TCGCGAGATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCA
ACACCAATCCAAAGTCCAAGTTAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCAGGT
FMO02788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11284-RE | 2309 | CG11284-RE | 974..1723 | 24..773 | 3750 | 100 | Plus |
| CG11284-RD | 1650 | CG11284-RD | 315..1064 | 24..773 | 3750 | 100 | Plus |
| CG11284-RC | 1897 | CG11284-RC | 562..1311 | 24..773 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8687268..8687742 | 24..498 | 2375 | 100 | Plus |
| X | 23542271 | X | 8688034..8688174 | 633..773 | 705 | 100 | Plus |
| X | 23542271 | X | 8687817..8687956 | 498..637 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:48 has no hits.
FMO02788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:34 Download gff for
FMO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11284-RA | 638..1396 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:49 Download gff for
FMO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11284-RB | 460..1218 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:43 Download gff for
FMO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11284-RC | 556..1314 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:43 Download gff for
FMO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8687264..8687742 | 15..498 | 98 | -> | Plus |
| X | 8687818..8687954 | 499..635 | 100 | -> | Plus |
| X | 8688037..8688177 | 636..777 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:49 Download gff for
FMO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8581297..8581775 | 15..498 | 98 | -> | Plus |
| arm_X | 8581851..8581987 | 499..635 | 100 | -> | Plus |
| arm_X | 8582070..8582210 | 636..777 | 98 | | Plus |
