FMO02791.5prime Sequence
1265 bp (868 high quality bases) assembled on 2008-05-23
> FMO02791.5prime
AAAAACGAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTAT
TCATCGGGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTG
TTCGAGAAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGG
CTTCGTTCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATC
TGAACGGTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAG
AGCCGGCGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCT
AACGGACAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACG
GCACCGTCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTG
GACTGTGTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGT
TGTCGATGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCC
CCAAGCCGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCC
GGGCATTGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGG
ACGCGAGCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGT
ACGGTCGTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGT
GACCGCATCATGGAATGGCTTTAGGGACTATGACTACTATGACCGCCGCT
TTCGAGGACTCACGCGATCTGTATGAGCGTCGCTATCAACCTCGCGAATG
CGCGACTTCCCACCGCCCGCCCATCTCTCGCCGCGAACCCATGCCTCTAC
CGCCCACCTTAAGCGGCAGCTTCGCTCCTGCAGCGTTTCTCGTGGAATAC
ACATATGGTTCAGCCGGCGGCTCCGCCTCCGCCGCCGCGTACCACAATGG
AATGGAGTCGCCTCTGTGCCCCCACTCCCACCCGGTTACGAGGATTTAAT
CCCGATGCTTTCGACGAAGCATGATTTCGTCGGCGGAAAGGCCCGGTCAT
TGCCGCCGGGTACAAAATTGCGACCTTACCAAGCTTTTTAGAAACAATTC
GTTTGGGCGGCGGGGGGCCCAGGTAAGGGGGCCTATAACTTAGACTCTAT
CATAACTTATATTCACACCTAGCCTGGGAATCCGGGTCGTGATACATGGC
GTGGGATTCACTAAATAAAAGACGTCGGCGGGGCGACCACGGACTGACGT
TCTGGTGTAAGACAA
FMO02791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lark-RD | 1758 | CG8597-RD | 276..1314 | 22..1061 | 4545 | 96.8 | Plus |
| lark-RE | 2087 | CG8597-RE | 605..1643 | 22..1061 | 4545 | 96.8 | Plus |
| lark-RC | 1784 | CG8597-RC | 302..1340 | 22..1061 | 4545 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7340068..7340771 | 22..726 | 3475 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7340875..7341103 | 725..954 | 670 | 91.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 529..588 | 125 | 69.4 | Plus |
FMO02791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:50:10 Download gff for
FMO02791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8597-RD | 273..1300 | 19..1048 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:40 Download gff for
FMO02791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 299..1326 | 19..1048 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:23 Download gff for
FMO02791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 299..1326 | 19..1048 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:23 Download gff for
FMO02791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7340065..7340770 | 19..725 | 99 | -> | Plus |
| 3L | 7340876..7341118 | 726..968 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:40 Download gff for
FMO02791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7333165..7333870 | 19..725 | 99 | -> | Plus |
| arm_3L | 7333976..7334218 | 726..968 | 92 | -> | Plus |
