FMO02792.5prime Sequence
1115 bp (1049 high quality bases) assembled on 2008-05-23
> FMO02792.5prime
AAATACCAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGG
ACTCACCGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCC
CGTCAAGACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGAC
GCCAACGATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCG
CCAAGGCAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTG
CACCACACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGC
CTCGTTTCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCG
TGGAGAATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGA
AAGGAGCTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCA
TCCCGGACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGC
GTAAACACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACC
ACGGGACAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGA
GAAAAAGCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGA
AGCGCAAAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCG
GGCGTGGGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGT
AATGGGAGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCG
GGCTGTCCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATG
AATAGCTTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCAT
GCAGCAACAGCAGATGTCAAGTGCGGTCTGCTGGGATCTGTGCTGGGCAC
TAGTTGCGGTCCAGTTGCCGGCGCGGAGGAGAGTGGTGGCGGGGCGGCGT
CGTGGGGAGTCTGCTATGTCGCAGTTGCAGCTTTCTAGACATTCGTTTGG
CCCGCGGCCCAGGTAGTTGTCTTATCATAATCATATCAATAATCAAATCA
CACCTAGCCTAGAGA
FMO02792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED19-RB | 1853 | CG5546-RB | 311..1320 | 23..1026 | 4825 | 98.9 | Plus |
| MED19-RA | 1763 | CG5546-RA | 311..1320 | 23..1026 | 4825 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17845754..17846191 | 460..23 | 2190 | 100 | Minus |
| 3L | 28110227 | 3L | 17844258..17844715 | 1026..575 | 1935 | 97.4 | Minus |
| 3L | 28110227 | 3L | 17844780..17844895 | 575..460 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:02 has no hits.
FMO02792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:50:12 Download gff for
FMO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5546-RA | 310..1323 | 23..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:22 Download gff for
FMO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 311..1324 | 23..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:38 Download gff for
FMO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 311..1324 | 23..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:38 Download gff for
FMO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17844254..17844714 | 576..1030 | 97 | <- | Minus |
| 3L | 17844780..17844894 | 461..575 | 100 | <- | Minus |
| 3L | 17845754..17846191 | 23..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:22 Download gff for
FMO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17837354..17837814 | 576..1030 | 97 | <- | Minus |
| arm_3L | 17837880..17837994 | 461..575 | 100 | <- | Minus |
| arm_3L | 17838854..17839291 | 23..460 | 100 | | Minus |
