FMO02794.5prime Sequence
1069 bp (1033 high quality bases) assembled on 2008-05-23
> FMO02794.5prime
AATATACGAAGTTATCAGTCGACATGACCATGCTGACCACTGCATCTGCG
ATGAGGTGCCTGCCCTCTGAATTCCCACTTGGAGTACCCACCATGCTGTC
GGACATCGACCAACTGCCCACGCTCCAGGTGGGCGACTACACGCTCCAGT
TCGAGTTGGGCGAGCCGACTGCCCAGGGCAAGGAGGTGGCCATCAAGGAG
CTGCGCGAAACACCCGAGCGCCAGAAGGAGGCCTCCAAGGAGCTGGCCCG
TCTTCTAGAAGCGGAGACGGACTTGCTGTACCCCAAGGGAAACGAGGAGT
GGCTGATCAGATACCTGCGGCCCTGCAAGTATTACCCGGAAAGTGCCCGT
GATCTGATTAAGCGGTACTACGCCTTCAAGGTGAAGCACGCGGATGTGTA
CACCGACCTGAAGCCATCGAACGAGGCCAACATCTTCAAGCACAACATCC
TTACCGTCTTCCCCAACCGAGATCAACTGGGTCGTCGCATTTTGGTCCTC
GAACTGGGCAAGCGCTGGAAGCACAAGCAGGTCACCCTCGATGAGGTGTT
CAAGGGAGCTGTGCTCTTCCTGGAGGCGGCCATGCTGGAGCCAGAAACAC
AGATCTGCGGAGCCGTTGTGATCTTCGACATGGATGGCCTCAGTCTCCAG
CAAACGTGGCAGTTTACGCCTCCGTTCGCCAAGCGCATTGTGGACTGGCT
TCAGGACTCGGTGCCGCTCCGGATCAAGGCCATTCACATCGTGAACCAGC
CGAAGATTTTCCAGGTGGTCTTTGCCCTGTTCAAGCCCTTCCTCAGGGAG
AAGCTGCGCAGCAGGATCATCTTCCATGGGCACCGATCGCGAGTCCCTGC
ACAAATACATGTCGCCCAAGTGCCTGCAGCCGCCTACGGAGGATTCCGGG
AGGCCAGCCGCATCGACAGCGACCAGTGGTACCAGCTGCTGCTCAGTGCG
ACACCGAGTTCGACACCATCAACCTCGTACGGCTACAGAAGAAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCCGGGCCCAGGTAGTGGTCAAATCTAT
CATATCATATCAAATCCAC
FMO02794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 1457 | CG10237-RB | 182..1158 | 19..994 | 4740 | 99.3 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 507..1421 | 81..994 | 4445 | 99.3 | Plus |
| CG10237-RA | 1338 | CG10237-RA | 125..1039 | 81..994 | 4445 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436157..19436633 | 987..511 | 2180 | 99 | Minus |
| 2L | 23513712 | 2L | 19437666..19437846 | 261..81 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 510..356 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 356..260 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 19440663..19440726 | 82..19 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:16 has no hits.
FMO02794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:21 Download gff for
FMO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 138..1116 | 16..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:36 Download gff for
FMO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..1158 | 16..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:30 Download gff for
FMO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..1158 | 16..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:30 Download gff for
FMO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19436149..19436633 | 511..998 | 98 | <- | Minus |
| 2L | 19436810..19436963 | 357..510 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 262..356 | 100 | <- | Minus |
| 2L | 19437666..19437845 | 82..261 | 100 | <- | Minus |
| 2L | 19440664..19440728 | 16..81 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:36 Download gff for
FMO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436149..19436633 | 511..998 | 98 | <- | Minus |
| arm_2L | 19436810..19436963 | 357..510 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 262..356 | 100 | <- | Minus |
| arm_2L | 19437666..19437845 | 82..261 | 100 | <- | Minus |
| arm_2L | 19440664..19440728 | 16..81 | 96 | | Minus |
