FMO02801.5prime Sequence
1001 bp (1001 high quality bases) assembled on 2008-06-10
> FMO02801.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACTACAAGG
CTGGCGCTTTTTCGGTGTCTCGGCAACCATCATCATCTACATCGGCGGCG
TCCTGTTCCTCTCCATGAACAACATACCCGGATCGCATCCCAAAAGACCG
CGCATCGAACGTTTCGCCGAGTTTCCCAGCTTTCATAGTCCTCGGTTTCC
GATGCCCAGCCGCAAGATGACGATACGCTGGTGTCGCGACCTCAAGTACA
TAAATCGAGATCTTCCAATCTACGCGGATTACAAGTCCGACTTCTACACG
GCCCTGCCCAGTGACGTCAGTGCTGCCCTGCAATCGCTGCCAGCGTTGAC
CGCCCTGGCCAGTTTTCCTGGCAGCGGTAACACGTGGCTAAGGTACTTGC
TCCAGCAGGCCACCGGCATCCTGACGGGCAGCATCTACAAGGACTACGGC
CTGCTGAAGACCGGCTTTCCGGCGGAGAACGTCTGCAACAGTTCAGTATT
ATTGGTGAAGACCCACGAGTGGGGCAGCAAAGCGTGGGCGCCCTTCTCGA
AAGCAATTCTTCTCGTCCGCGATCCGGAGAAAGCGATCATCGCGGAGTTC
AATCGCCAGAGTGGCGGTCACATCGGATTCGCATCACCGGATCGCTACAA
GCGCACCAAGGGAAAATACTGGCAGCAATTCGTGAGCAACAAGCTCAAGG
GCTGGGAGATGATGAACCTCAGCTGGGCGCGCAACTTCACGGGCAGCATC
AAGGTGGTGTTCTACGACGACCTGGTCCACCATACGGAGCGGGAGCTGCG
CTCCATTCTGGACTTCCTGCAGTTCCCCATCAACGAGCAACTGATGCGGT
GCGCCATTATGCGGAACGAGGGCATCTTCCAGGCGGAAGAAACGTCTGTT
ATCTTTCGATCCCTATACGGAATCCATGAGAGCGGAGTGCAGAATCGACG
GCGCATCGTGTACGATAGCTGGGCGTCAGAGCAGCAAGCTTTCTAGACCA
T
FMO02801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9164-RD | 4420 | CG9164-RD | 2758..3706 | 33..979 | 4605 | 99.3 | Plus |
| CG9164-RB | 1781 | CG9164-RB | 119..1067 | 33..979 | 4605 | 99.3 | Plus |
| CG9164-RC | 2476 | CG9164-RC | 546..1494 | 33..979 | 4605 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15381802..15382170 | 667..299 | 1845 | 100 | Minus |
| X | 23542271 | X | 15381370..15381666 | 964..668 | 1375 | 99 | Minus |
| X | 23542271 | X | 15382546..15382684 | 171..33 | 680 | 99.3 | Minus |
| X | 23542271 | X | 15382229..15382357 | 298..170 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:23 has no hits.
FMO02801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:51 Download gff for
FMO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9164-RC | 546..1498 | 33..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:00 Download gff for
FMO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9164-RC | 546..1498 | 33..985 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:00 Download gff for
FMO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15381365..15381666 | 668..968 | 98 | <- | Minus |
| X | 15381802..15382170 | 299..667 | 100 | <- | Minus |
| X | 15382229..15382355 | 172..298 | 100 | <- | Minus |
| X | 15382546..15382684 | 33..171 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:51 Download gff for
FMO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15275398..15275699 | 668..968 | 98 | <- | Minus |
| arm_X | 15275835..15276203 | 299..667 | 100 | <- | Minus |
| arm_X | 15276262..15276388 | 172..298 | 100 | <- | Minus |
| arm_X | 15276579..15276717 | 33..171 | 99 | | Minus |
