FMO02804.5prime Sequence
902 bp (902 high quality bases) assembled on 2008-06-10
> FMO02804.5prime
CTTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGACTCCAGC
CACATAGCCGTGCGAGTGGCACGTCGTAGTCCCTCGCCGGCCGCCGTCTC
TCAGTCGTCGTACGGCAGCCTGGGTTCCAGCCAAGATATACACATTCGAG
TGGACAAGGAAGGCGTTGCAAGCGAATCCACTCCCTTGCTGGCAGCTGCT
CAGCGGTCCATCAAGACGTCCTCATCCCTCACAGCCTCAGTCTCAGCCTC
CTCCACGACGCCTTCGAATTGCCGAAGGAACCCGACGCTCCACGAAGACT
GCTTCAATTGGCGCTCGGTGGGACTGCTGGTCATGTGTGCATCCGCCTTG
GCACTGGCCGCCTATTTGCTCTGGAGACAAACCCAAACGCCGGACTTTGG
CTATCGACTCAGTATCGTGGGTCATGGCATATGGTCGGATATGGAACTTC
AGGGTCGGGGAACTCTTTTCGATCCGATCGGTGTCGGCACAGTGATTTTT
ACCCACACTGGAAGCAATGAATGCCACGATGATTGCCCGGATGTATTGCA
TAAGCTGGAAAGGTCGCATGTGGGGGAGCTGCCCTACAACTTTCTGGTCG
CCGGTGATTGTCAGGTTTTCGAGGCACAAGGATGGCACTATCGGAGCCAG
TATCCAAGGGATCTAAATGGAATAGACTCGTTGGTGATGGCCTTTGTGGG
TAACTTCAGCGGCAGACCACCCATCGATTGCCAGTTGATGGCCGCCCAGG
CTCTGATCCTTGAGTCTTTAAAGCGTCGGATTCTGCAGCCAATTTACCAA
CTCTTCGTGTTGGGCAGCTATACGGACGCACTGCAGCGGGAACTGAGGCA
CTGGCCGCACTACGCGAGCCACCAAACGTCCAAGGCAAGCTTTCTAGACC
AT
FMO02804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LD-RC | 3010 | CG33717-RC | 719..1565 | 38..884 | 4235 | 100 | Plus |
| PGRP-LD-RA | 3600 | CG33717-RA | 1309..2155 | 38..884 | 4235 | 100 | Plus |
| PGRP-LD-RB | 3563 | CG33717-RB | 1272..2118 | 38..884 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5782917..5783240 | 561..884 | 1620 | 100 | Plus |
| 3L | 28110227 | 3L | 5781996..5782308 | 69..381 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 5782671..5782849 | 382..560 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:59 has no hits.
FMO02804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:22 Download gff for
FMO02804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1272..2124 | 38..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:12 Download gff for
FMO02804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1272..2124 | 38..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:12 Download gff for
FMO02804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5781997..5782308 | 70..381 | 100 | -> | Plus |
| 3L | 5782671..5782849 | 382..560 | 100 | -> | Plus |
| 3L | 5782917..5783246 | 561..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:22 Download gff for
FMO02804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5775097..5775408 | 70..381 | 100 | -> | Plus |
| arm_3L | 5775771..5775949 | 382..560 | 100 | -> | Plus |
| arm_3L | 5776017..5776346 | 561..890 | 99 | | Plus |
