FMO02805.5prime Sequence
1237 bp (1040 high quality bases) assembled on 2008-06-10
> FMO02805.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACCTGAAGCAC
AGTGCGGGTGGAGCTGGCGAGAACAGCGAGACCTTCATTGCCACCAGCAA
GTCCACAGACATGATCACGCCCAAGGAGAAGGAGGGCAAGGGGCTGAAGG
TGGCGGGTGGCCATAACCCCCCAGCCGAAGGCTACAAAGTCTACGCCCGA
CGCTGGGCGGTGCTCATCCTCTTTGTGTTCTACTCATCCTCGAATGCCAT
GCAGTGGATACAATACACCATCATCAACAACATAATAACCCGCTACTATG
GCATCAGCGACAAGTGGGTGGACTGGACGTCCATGATTTATATGATCCTG
TACATACCGCTCATATTCCCAGGCAGTTGGTTTTTGGATAAAGTGGGTCT
TCGCATCACCGCTCTAGTTGGAATCGTCGGCACTTGTGTGGGTGCCTGGA
TCAAGGTCTTCTCGGTGGACCCGTCGCTCTTCTACGTCAGCTTCATTGGC
CAGTCGATCGTTGCCCTGGCCCAAGTGTGCATCCTGTCGCTTCCCGCGCG
CTTGGCTGCGGTATGGTTCGGTCCGGACCAGGTGTCCTCGGCCACCAGCG
TGGGAGTCTTTGGCAACCAGCTGGGCGTGGCCGTGGGCTTCGTGCTGCCA
CCCATGCTGGTGCCCAATTCACCGGATCTCGAGACGGTGGGCAGTGATCT
GCAGATGATGTTCTATTTGGTGGCCGGGCTCACCTCTATCCTGCTCGTCC
TGATGGTGATATTTTTCCAGGACAAACCACCCACTCCGCCATCCGCCGCC
CAGGAGGCAGCCCAGCTCTTGGAAAGTTCCGAAGCGGAGCAAGTCAGCTT
CATGCAGTCGCTGAAGAACCTGATGACCAACCGGAACTTCATCTTCCTGC
TCCTCTCGTACGGCATCAATGTGGGCGTCTTTTACGCCATTTCCACGCCT
CTCAATCCGGTGGTGCTGAAGTATATCCCGGCCACGAGGTGGACGCCGGA
CGTATGGGCTCAGCATTGTGCTAGCCGGATGCTGGGCTCGTGCTATCGGC
ATTGGTGCTGAAAAGACGCACAAGTTCAAGAAACGACCTGGCGTCTACCG
CTGTCATGGTGGCATGTGGATCTTCACTTCACCTGAACCGGCACACTCCG
CGGGTTAGCTCCACCAGTGACGCCTCGTGCTGCTTTATAGAACTGTTACG
TGCGGTGGACTTCGAGTTCGGCCGAGCTGATACTTCC
FMO02805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1358-RD | 3094 | CG1358-RD | 371..1481 | 36..1134 | 5150 | 98.4 | Plus |
| CG1358-RB | 2485 | CG1358-RB | 232..1342 | 36..1134 | 5150 | 98.4 | Plus |
| CG1358-RA | 3374 | CG1358-RA | 1121..2231 | 36..1134 | 5150 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7602432..7602657 | 620..395 | 1130 | 100 | Minus |
| 2R | 25286936 | 2R | 7597467..7597665 | 961..763 | 965 | 99 | Minus |
| 2R | 25286936 | 2R | 7605943..7606088 | 181..36 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 7598216..7598360 | 762..618 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 7603408..7603521 | 292..179 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 7603121..7603225 | 396..292 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 7597264..7597390 | 1080..959 | 295 | 91.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 1011..1089 | 686..610 | 138 | 65.8 | Minus |
FMO02805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:00 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:36 Download gff for
FMO02805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1358-RA | 1103..2211 | 28..1127 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:08 Download gff for
FMO02805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1358-RA | 1115..2223 | 28..1127 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:08 Download gff for
FMO02805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7597265..7597389 | 960..1079 | 92 | <- | Minus |
| 2R | 7597469..7597665 | 763..959 | 98 | <- | Minus |
| 2R | 7598216..7598357 | 621..762 | 100 | <- | Minus |
| 2R | 7602432..7602656 | 396..620 | 100 | <- | Minus |
| 2R | 7603122..7603224 | 293..395 | 100 | <- | Minus |
| 2R | 7603408..7603519 | 181..292 | 100 | <- | Minus |
| 2R | 7605944..7606095 | 28..180 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:36 Download gff for
FMO02805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3484770..3484894 | 960..1079 | 92 | <- | Minus |
| arm_2R | 3484974..3485170 | 763..959 | 98 | <- | Minus |
| arm_2R | 3485721..3485862 | 621..762 | 100 | <- | Minus |
| arm_2R | 3489937..3490161 | 396..620 | 100 | <- | Minus |
| arm_2R | 3490627..3490729 | 293..395 | 100 | <- | Minus |
| arm_2R | 3490913..3491024 | 181..292 | 100 | <- | Minus |
| arm_2R | 3493449..3493600 | 28..180 | 96 | -> | Minus |
