FMO02806.5prime Sequence
579 bp (579 high quality bases) assembled on 2008-06-10
> FMO02806.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTCATCCCGTAA
GACCGCCGGACGTCGCGCCACCACCAAGAAGCGCGCCCAACGCGCCACCT
CCAATGTGTTCGCCATGTTCGATCAGGCGCAGATTGCCGAGTTCAAGGAG
GCATTCAACATGATCGACCAGAACCGTGATGGCTTCGTCGAGAAGGAGGA
TCTGCACGACATGCTGGCCTCGCTGGGCAAGAACCCAACGGACGACTATC
TCGATGGCATGATGAACGAGGCGCCCGGGCCCATCAACTTCACCATGTTC
CTCACGCTCTTCGGCGAGCGGCTGCAGGGCACCGATCCCGAGGATGTGAT
CAAGAACGCCTTCGGCTGCTTCGACGAGGAGAATATGGGCGTCCTGCCCG
AGGATCGCCTGAGGGAGCTGCTGACCACCATGGGTGATCGGTTCACAGAC
GAGGATGTGGACGAGATGTATCGGGAGGCGCCCATCAAAAACGGTCTGTT
CGACTACCTCGAATTCACGCGCATCCTTAAGCACGGTGCCAAGGACAAGG
ATGAGCAGAAAGCAAGCTTTCTAGACCAT
FMO02806.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqh-RE | 1024 | CG3595-RE | 153..679 | 36..562 | 2620 | 99.8 | Plus |
| sqh-RD | 1097 | CG3595-RD | 226..752 | 36..562 | 2620 | 99.8 | Plus |
| sqh-RC | 1403 | CG3595-RC | 532..1058 | 36..562 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6223583..6224005 | 458..36 | 2115 | 100 | Minus |
| X | 23542271 | X | 6223406..6223511 | 562..457 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:10 has no hits.
FMO02806.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:26 Download gff for
FMO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RB | 215..748 | 29..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:16 Download gff for
FMO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RC | 525..1058 | 29..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:16 Download gff for
FMO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6223406..6223511 | 457..562 | 99 | <- | Minus |
| X | 6223585..6224011 | 30..456 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:26 Download gff for
FMO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6117439..6117544 | 457..562 | 99 | <- | Minus |
| arm_X | 6117618..6118044 | 30..456 | 99 | -> | Minus |
