FMO02807.5prime Sequence
1212 bp (1009 high quality bases) assembled on 2008-06-10
> FMO02807.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGAAAGTATCA
GCACCCCAGGTCGGCGACGGAACAACATGCGAATCAATGCCGAAGACAAT
GCGCTGGATCAAATTACGAAAGAGGCGGAAGCGCGACTTGCTGCGCGTCG
ACAGGCGCGCGCCGAAGCCCGCGAGATTCGCATGAGGGAGCTGGAGCGGC
AGCAGAAAGAGCAGGAGATCACCGCCGACCGGGTCTTCGACATGCAAAAC
TCCACGGCAGTGGGCAGCGAAACTCTGTCGGCGCATCCCGTGCGCCTCGC
CTACGGCGGACTGTTAAACGTGACCCGTGCATCAGCATCCCGCCGCAGCA
GTGAGGACTCCGTGGAGGAGGAGGGCAGAAGTTTTCGCGACTTCAAGCAC
GAGCTTAAGGATGTTGAGGAGCGGTTTCGCAAAGCCATGATAACGAACGC
CCAGTTGGACAACGATCGCGCCTCGCAGGCCTACGAAGTCAAGCTACTGA
AGGACAAATGCGAAATAATGGAAGAGTCGTATGCACAACTACAGCGCGAG
TTCAAGGAGAAGATGCGTGACTGCAATGCCCTCAAACGCAACCTGGATCG
CGCCAATCTCGAGCTTAAGCTAGTACAAGGGCAGTTAAACGAGCGCGACT
CGTTGATCGCCGAACAGGGCCTTCTAATTGTAGCAGTTGAAAATGCCGAT
GGCAGCGATGCCAAGCGAGCTCTAGTGAGTGTCGAGAATGCCAAGGTGCT
GGCCTCCGTGCAGGGTTCTTTAGACGTTAGACTTAAAAAGTTCAGTGACG
AGAAGCAGCGGCTGCTGGCGGAGGTGCAGAAGCTTCACGAACAACTTGAC
GAGTATAAAAGTGATGGAATTTCCCGGACGCCGCAGTCTTTCGCAAGGTC
CCTTCGCGATGAGAATGATTACGAGGCCCAACGGGAAACAAACAAATCAT
TCAGACCATAAATATAAGCTGCAAAGCGGAACAAGAAATCGCCAACCTAC
AGTCGAGCCTAGCCGCGCTCCGAAACTCAAGTATCCGATACAAAGCACCG
CAGATGCTGCCGAAAAGCGGAGCTGACCTGAAGCTGGAACGCCGCAGCTG
CAACGCAACACAGGAAACTCTGAAAGTGAGAAGCTGAACGTCAACACATT
GTGAACCCCGATAGTGAAAACCAAGAGTCCATTCTAAGGAATTAAAGACA
GCCTTTCTCTGA
FMO02807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8578-RC | 1847 | CG8578-RC | 112..1204 | 38..1121 | 5025 | 98 | Plus |
| CG8578-RB | 1474 | CG8578-RB | 92..1184 | 38..1121 | 5025 | 98 | Plus |
| CG8578-RA | 1615 | CG8578-RA | 112..1204 | 38..1121 | 5025 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15845982..15846347 | 408..773 | 1830 | 100 | Plus |
| X | 23542271 | X | 15845640..15845927 | 123..410 | 1440 | 100 | Plus |
| X | 23542271 | X | 15846407..15846568 | 772..933 | 700 | 98.2 | Plus |
| X | 23542271 | X | 15845382..15845469 | 38..125 | 425 | 98.9 | Plus |
| X | 23542271 | X | 15846976..15847138 | 950..1106 | 395 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:26 has no hits.
FMO02807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:28 Download gff for
FMO02807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 88..1183 | 33..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:02 Download gff for
FMO02807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 109..1204 | 33..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:02 Download gff for
FMO02807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15846409..15846567 | 774..932 | 98 | -> | Plus |
| X | 15846957..15847138 | 933..1106 | 92 | | Plus |
| X | 15845377..15845468 | 31..124 | 95 | -> | Plus |
| X | 15845642..15845926 | 125..409 | 100 | -> | Plus |
| X | 15845984..15846347 | 410..773 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:28 Download gff for
FMO02807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15739410..15739501 | 31..124 | 95 | -> | Plus |
| arm_X | 15739675..15739959 | 125..409 | 100 | -> | Plus |
| arm_X | 15740017..15740380 | 410..773 | 100 | -> | Plus |
| arm_X | 15740442..15740600 | 774..932 | 98 | -> | Plus |
| arm_X | 15740990..15741171 | 933..1106 | 92 | | Plus |
