FMO02808.5prime Sequence
1250 bp (1043 high quality bases) assembled on 2008-06-10
> FMO02808.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGTTAAAGTTTATC
AGAGGAAAAGGGCAGCAGCCCAGTGCTGACAGACACCGCCTACAGAAGGA
CCTTTTTGCTTATCGTAAGACGGCACAGCATGGCTTTCCTCATAAGCCTT
CGGCTCTTGCGTATGATCCAGTTTTGAAACTTATGGCAATAGGGACGCAA
ACAGGGGCTTTAAAAGTTTTCGGTCAACCCGGAGTTGAATTGTACGGTCA
GCATACTTTGTTAAACAATTCAGCATCGGAGCTTAATGTACAATTACTTG
AATGGGTGTATGGAACTGGTCGCATACTTTCGTTGACGGCAGCGAATCAA
TTAATTCTATGGGAGCCAGTTGGAGCAACGTTGCTGCCAATCAAAACACT
ACCGTTTGACGGCAAACTTAAAAAAGTTTCATCGCTGTGCTGTTCTCTCA
GTAAGGATCTGCTATGGATTGGAACAGAAGGTGGAAACATCTATCAACTG
GATTTACATACATTTACCATTAAGGAGCCTGTAATTTACCATGACGTTGT
GCTAGAGCAGGTGCCACCAGCCTACAAGCTAAATCCTGGTGCAATTGAGT
CAATCCGCCAACTTCCAAACTCCCCTAGCAAACTTCTAGTTGCATACAAT
CGCGGCCTTTGTGTTTTGTGGGATTTTGAAAGCGCATCTGTCCAGCGAGC
ATACATAGCCCCTGGACATGGACAGAGCGTTGGTCTTACAGTGAACTTCG
AAGGATCTGAATTTACCTGGTACCACGCTGATGGTTCATACGCCACTTGG
AGCATAGATAACCCAGAACCGCCGTCGAATGTTATTTATGTGCCTTATGG
ACCTGATCCATGCAAAAGCATAAATCGACTGTACAAAGGCAAGCGAAGAT
CCAACGATGTTATTTGTTTTTTTCCGGCGGCATGCAACGGTCAGCATATG
GTTGATCACAATTGTGTGTCCGTTCACGCCAGCGATGGACACAAGGTGTG
TCTTGACTTTACGTCTAAGTGATTGACTTTTTTGTGACCTTTGAAATAAT
AGAGATGTCGCTGAAGTTCTTGTTGTACTACCTGAAGAAGAACTCTGCGC
TTTACCATCTTACTGACCCTAATATTTGGTGCTATCAAGGCGCCTATATC
CTCGTCTGTTCATGCATCAGCTGTCACTGCATTACTGCTCTGAGTCGTAC
AGTCGTATGGAAGTGATTTTAAGAGCGTTGGGAAGGATACGCAACTACGT
FMO02808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gl-RK | 5281 | CG2671-RK | 529..1724 | 36..1226 | 5390 | 97.4 | Plus |
| l(2)gl-RJ | 5528 | CG2671-RJ | 667..1862 | 36..1226 | 5390 | 97.4 | Plus |
| l(2)gl-RI | 5390 | CG2671-RI | 529..1724 | 36..1226 | 5390 | 97.4 | Plus |
| l(2)gl-RK | 5281 | CG2671-RK | 387..441 | 35..89 | 260 | 98.2 | Plus |
| l(2)gl-RJ | 5528 | CG2671-RJ | 525..579 | 35..89 | 260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14933..15713 | 898..118 | 3890 | 99.9 | Minus |
| 2L | 23513712 | 2L | 14598..14876 | 1178..897 | 845 | 93 | Minus |
| 2L | 23513712 | 2L | 17053..17136 | 119..36 | 420 | 100 | Minus |
| 2L | 23513712 | 2L | 19891..19945 | 89..35 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:51 has no hits.
FMO02808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:56 Download gff for
FMO02808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RI | 529..1724 | 36..1226 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:16 Download gff for
FMO02808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RI | 529..1724 | 36..1226 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:16 Download gff for
FMO02808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14542..14874 | 899..1226 | 91 | <- | Minus |
| 2L | 14933..15711 | 120..898 | 99 | <- | Minus |
| 2L | 17053..17136 | 36..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:56 Download gff for
FMO02808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17053..17136 | 36..119 | 100 | | Minus |
| arm_2L | 14542..14874 | 899..1226 | 91 | <- | Minus |
| arm_2L | 14933..15711 | 120..898 | 99 | <- | Minus |
