FMO02809.5prime Sequence
996 bp (996 high quality bases) assembled on 2008-06-10
> FMO02809.5prime
CGTATAGCATACATAATACCAAGTTATCAGTCGACATGCCGGGCAAGGGG
AACAACCGCGATCGCATCCGGGATCCCCGCGAGGAGATCCTGCTCGAGAC
GAACTTTGAGGACGACGGCGGAGTCCTGACGCGCGCCTACAACGGAAATC
CGTATAACCCGACCATCCAGAACCGTCGGCGCAACTCGTACCGCTCGGAT
CACTCCTTGGACAGGTACACGGAGCGCGGAGGCGAAGGAGAATGCTGCCA
ATCCTGCATGGCGCGTATTCCCTACGCCACCCTGATAGCCACTCTGATGT
GTCTCCTGGGAGTAGGAATCTTCTGCTTCACCATGTACCGAGGAGCCTCT
CTCACCGTTATAATGGTTGACCAGGTTTTCCACCTACGCCTGATATGGAT
CGAAGCTGTGCAAATGATTTTCGTAATAATTGGAGCGGGCATGGCCGCCC
TCGGATTTATGATCCTGTTCGTCGGATTTCTGGCCACCGGAGCCACCAGA
TACAAGGTTTACCGGGCGTGGCGGTCGCGAGTGGGTGGGCGAATCTCGTG
CGCCGTCCTTATGGGGATAACCTACCTGCTAAACTTTGTGTGGAGTCTGA
TCCTTTGTTTCCTGGTAGTGGTTACCTTCATCTACACCATGTTCTGGAAC
ATGTGCACCAGTGTTGAGCACTCTCAAAGCTGCATTGATCTGACGCAATT
CCATTTTATGTTCCCGCCAAACACGAAACTGGAGGACATGAAGGTCTGCG
AAAAGTACGAGATAAAGGCATTCTGCAAAGACGGTGTTGAGAACGCCGAG
GTGATGTTTATATTGGCCACTCTGTCCACCCTTTTGGTGCTGCTCAGTCT
GGTCACTACCTGATGTGCCTGTCTGCTAACTACGCCCACATTCGGGACAC
GAAAAGTTCAGGAACTACAGGAGATCCAGAACCCTGAACGAGCTGGAGTA
CCGTGCCACTTCGAAGGATCGCTTCAAGGCAAGCTTTCTAGACCAT
FMO02809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| M6-RF | 2370 | CG7540-RF | 624..1569 | 36..979 | 4575 | 99.2 | Plus |
| M6-RC | 2174 | CG7540-RC | 428..1373 | 36..979 | 4575 | 99.2 | Plus |
| M6-RB | 1945 | CG7540-RB | 199..1144 | 36..979 | 4575 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21511308..21511613 | 397..702 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 21511670..21511948 | 703..979 | 1140 | 97.1 | Plus |
| 3L | 28110227 | 3L | 21510079..21510281 | 36..238 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 21511089..21511251 | 236..398 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:12 has no hits.
FMO02809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:39 Download gff for
FMO02809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1153 | 28..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:33 Download gff for
FMO02809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1153 | 28..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:33 Download gff for
FMO02809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21510078..21510280 | 35..237 | 99 | -> | Plus |
| 3L | 21511091..21511250 | 238..397 | 100 | -> | Plus |
| 3L | 21511309..21511613 | 398..702 | 100 | -> | Plus |
| 3L | 21511670..21511957 | 703..988 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:39 Download gff for
FMO02809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21503178..21503380 | 35..237 | 99 | -> | Plus |
| arm_3L | 21504191..21504350 | 238..397 | 100 | -> | Plus |
| arm_3L | 21504409..21504713 | 398..702 | 100 | -> | Plus |
| arm_3L | 21504770..21505057 | 703..988 | 95 | | Plus |
