FMO02813.5prime Sequence
1228 bp (1068 high quality bases) assembled on 2008-06-10
> FMO02813.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGTTCAAGAC
GTACTATGGATCGTACTCACGGTGCAGTTGAGTTTTGGTCTTGCGTATTT
TGAAAACAATCAAAGGACGCAGGACTATGATGTCGATAAAAATGGTTCTG
TACACCACAAAAACTGGGTGCGTAACGAAATGATGGACAGCTTGGGCTTG
TACTGGCTCAAATGGTGGATAAACGCCAACGAAAATAGCATTTACTTTGA
AGTAACTGTTCACACACGAGGCTTTGCCGGCCTGGGTTTCTCCAAGGATG
GCCGGCTGGCCAGAGCGGATATGGTTTTGATGTGGGTGGATGACGCCACA
GGACATCCGAACGTCTTGGACTGCCATGGGGCGCTGCATCCTTCAAGCGG
ACCGCCGCTGCAGGACGATACTCAAAACTACGATGTCCTAGATGGCAAAC
AAAATGGGACGCACACAATCCTGAAGTTTAAACGCAAAATTGAGACCTGT
GACCCATTCGATATTCCACTCTCCGCTGATACGTTTAAGGTACTGTGGTC
CATTGGGGAAAATGATCCTATTCATGGAAACTTGGATTGGCAAGGTCAGA
GCAGAGGCGTGAAAGCTTTGCAATTGTTTTCGCCAATGTTTACGAAAAAT
AGTCACTCGATCGAAGGCATCCAAAAATGGGACATAACTGTGAACAACGT
AACAATTGATCGGTCAATGGATACACTATACTGGTGTAAAATAGTGCGAC
TACCAGAGTTAACTGGCAAACAGCATATAATTGGTTATGAGCCGCTGCTG
TCTGGTAAATACGAGAGGAATGTTGTTCACCACATGACCCTGTTTGAGTG
TCAGTCCAAGATATACTCTGGATCCGATCCTTCGTCCTGGGACCTTTGGG
TTAGGAGTGCCGGCACAGTGTGCAACAGCAACCTACTGACGCCACGCGAC
TGGGATTCGTGCTCTACGCCAGTTGCAGTTTGGTCCTTGGGATCTGATGG
ACAGTTTCTACCTCCCCACCGCAGGGATCCCAATGGGGCGGAGCATCTGG
AGTTAGCTTTTTAATATGCTGCAATACCCCTACGATAATCCCGGATGGAA
AGGAATCGGTGATCCCCTCGCTTTCCGAATAAACTAACCACCAATCTGCA
CCTACGATTTCGAAATCCTAATATGAGTCAATCCGACGCACTCATTCGCT
GTCAAGAAGATTGAATTCCTCGCGGCAA
FMO02813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..1277 | 35..1173 | 5255 | 97.8 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..1277 | 35..1173 | 5255 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16089127..16089708 | 1111..525 | 2630 | 98.1 | Minus |
| 3L | 28110227 | 3L | 16089763..16090253 | 525..35 | 2455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:29 has no hits.
FMO02813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:39 Download gff for
FMO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 132..1220 | 32..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:24 Download gff for
FMO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..1225 | 32..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:16 Download gff for
FMO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..1225 | 32..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:16 Download gff for
FMO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16089096..16089710 | 521..1141 | 96 | -> | Minus |
| 3L | 16089768..16090255 | 35..520 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:24 Download gff for
FMO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16082196..16082810 | 521..1141 | 96 | -> | Minus |
| arm_3L | 16082868..16083355 | 35..520 | 99 | -> | Minus |
