FMO02814.5prime Sequence
1234 bp (1039 high quality bases) assembled on 2008-06-10
> FMO02814.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGCCGAACGACC
GAAAAATTTGTTTGCAACCGGATCCAGTCGCTCCCGCAATCCCCCGGATC
AGCTAAGCCTGAATAATCTTAGCATACGCCATCCGCCCTCGTCCACGTCG
TCCACTTCTTCGGGATCCACCTCCTCGGGCTCAAGTTCCTCATCACAGCA
CAACCATGTGACCCGCTGTTTTGGTGCCCAGCAGCCACAGCAAACCCCGC
CGGTGGCCAGCAGTCAAGTGCCACCGGTGCCGGCAGCATCGAGCAGCAGC
GCTGCCGATCGTCACCGGGAGCGAATTCGCCAGCAGGCCTGTGGCAAGCT
ACAGTTTGGTGAGGGCGGCGCTAATACACACACATTTACTTCAGACGATC
TCGAGGATGAGGGCGAAATTGGACGCGGTGCATTTGGGGCAGTCAACAAG
ATGACCTTTAAGAAATTGGACAAGGTGATGGCCGTCAAGCGCATTCGATC
CACCGTAGACGAGAAGGAACAGAAGCAGCTGCTCATGGATCTCGAGGTGG
TCATGAAGTCCAACGAGTGCATTTACATTGTTCAGTTCTATGGGGCGCTT
TTCAAGGAGGGTGACTGCTGGATTTGTATGGAGCTGATGGACACCTCTTT
GGACAAGTTTTACAAGTACATCTACGAAAAGCAGCAGCGCCACATTCCAG
AGTCTATACTGGCTAAGATAACAGTGGCCACGGTCAATGCGCTGAACTAT
TTGAAGGAGGAGCTAAAGATTATCCATCGGGATGTGAAACCGAGCAACAT
TCTGTTGCACCGTCGCGGAGACATAAAGCTGTGCGATTTTGGTATTTCGG
GTCAGCTGGTCGACTCTATTGCCAAGACCAAGGATGCGGGCTGCAGGCCC
TACATGGCGCCGGAGCGCATTGATCCAGAACGTGCCAAGGGCTACGATGT
ACGAAGCGATGTTTGGTCATTGGGCATCACATTATGGAGGTGGCGGACTG
GTAATTTCCCCTATCGTAAATGGGACTCTGTTTTCGAGCAGTTGTGCAAG
TTGTGCAAGGCGAACCGCCGCGACTTTTGAACTTCCTATAACGGCTTGGA
GTTTTCAAAGAGTTTGTGAACTTTGTCAATACTTGCCTAATAAAGAGAAA
GCGAATCGAACCCAGGTAATGCGTCTGCTGAATTCCCTTCATGTCTGGGC
GGAACACGACCCACATGTAATAGTGCCTCGGTAT
FMO02814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 4110 | CG9738-RC | 286..1445 | 37..1192 | 5370 | 98.1 | Plus |
| Mkk4-RB | 2525 | CG9738-RB | 286..1445 | 37..1192 | 5370 | 98.1 | Plus |
| Mkk4-RA | 2698 | CG9738-RA | 286..1445 | 37..1192 | 5370 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8649478..8650319 | 909..68 | 4210 | 100 | Minus |
| 3R | 32079331 | 3R | 8649282..8649420 | 1047..909 | 600 | 98.6 | Minus |
| 3R | 32079331 | 3R | 1031175..1031300 | 922..1047 | 385 | 90.6 | Plus |
| 3R | 32079331 | 3R | 8648962..8649047 | 1135..1050 | 290 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:08 has no hits.
FMO02814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:01 Download gff for
FMO02814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1410 | 29..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:28 Download gff for
FMO02814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1410 | 29..1159 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:28 Download gff for
FMO02814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8648958..8649047 | 1050..1140 | 92 | <- | Minus |
| 3R | 8649279..8649419 | 910..1049 | 97 | <- | Minus |
| 3R | 8649478..8650319 | 68..909 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:01 Download gff for
FMO02814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4474680..4474769 | 1050..1140 | 92 | <- | Minus |
| arm_3R | 4475001..4475141 | 910..1049 | 97 | <- | Minus |
| arm_3R | 4475200..4476041 | 68..909 | 100 | <- | Minus |
