FMO02815.5prime Sequence
1243 bp (1007 high quality bases) assembled on 2008-06-10
> FMO02815.5prime
ACTTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGAACTATTT
TTCCCTTACCTCGCACAAAAAACATCGCGGCCATCCGTCAGCAGGACCGA
GCAATGCGTACCAGAACCTGGAAAAAACCTCGGTGCTTCAGGAGACGCGC
ACCTTCAATGAGACGCCGGTGAACCCAAGGAAGTGCATCCACATCCTGAC
CAAAATCCTGTACCTGATTAATCAGGGTGAGCAGCTTGTGGCCCGCGAGG
CCACCGACTGCTTTTTTGCGATGACGAAGCTCTTCCAATCTAAGGACGTG
GTGCTGCGTCGTATGGTATACCTGGGCATCAAGGAGCTGAGCTCCATTGC
CGAGGACGTCATCATCGTGACTAGCTCGCTAACGAAGGATATGACCGGCA
AGGAAGACCTGTACAGGGCCGCCGCAATCCGGGCCTTGTGCAGCATCACG
GATAACACCATGTTGCAGGCCGTGGAGCGCTACATGAAGCAGTGCATTGT
TGACAAAAACGCGGCAGTTTCTTGTGCTGCATTGGTCAGTTCTTTGAGAT
TGGCCAACACTGCCGGCGACGTGGTCAAGAGGTGGGCAAACGAGGCCCAG
GAGGCTTTGAACAGCGACAACATTATGGTACAGTACCACGCGTTGGGTCT
GCTCTACCATATCCGCAAGTCGGATCGGCTGGCTGTCTCCAAGTTGGTCA
ACAAGCTGACCAGAGGATCTCTAAAGAGTCCCTATGCCGTTTGCATGCTG
ATACGCATTGCCTGTAAGCTGATCGAGGAGGAGGACATTCCCTCTGAGGA
GCTTTCCGATTCACCCTTGTTTACGTTCATCGAGTCCTGTCTGCGCAAAA
GAGCGAGATGGTCATCTACGAGGCGGCTCACGCCATTGTCAACCTCAAGA
ACACCAATCCGCGAATGCTATCGCCGGCGTTCTCCATCCTCCAGCTTTTC
TGCAGCTCGCCGAGGCAACGTTGCGCTTGCTGCTGTGCGCACGCTTAACA
AGTGCGATGCCGCACCGGCTGCGGTGACACTGTAACTTGGAACTGGAAAG
GTCTCATCACGGACTCAATCGATCGTGGCCCCTCTTGGCATCACTACGCT
GCTAAAGACGGCCTGATCCTCGGTAAGCGCGGATGACCGAATCTCCCGTT
GTGGCCGAAATTTCGATGATTCAGGTGGGGTCTGCCAGGCATTGTCGCTC
TGCTGATCCAAAATAATCCGCGCAGGACGACACACACAGTGGC
FMO02815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RB | 3276 | CG1528-RB | 302..1507 | 38..1224 | 5060 | 96.1 | Plus |
| gammaCOP-RA | 3057 | CG1528-RA | 136..1288 | 91..1224 | 4795 | 95.9 | Plus |
| gammaCOP-RD | 3054 | CG1528-RD | 136..1285 | 94..1224 | 4780 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31572444..31573156 | 38..750 | 3565 | 100 | Plus |
| 3R | 32079331 | 3R | 31573253..31573621 | 750..1109 | 1220 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:56 has no hits.
FMO02815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:45 Download gff for
FMO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-RB | 299..1406 | 33..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:26 Download gff for
FMO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 299..1406 | 33..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:05 Download gff for
FMO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCOP-RB | 299..1406 | 33..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:05 Download gff for
FMO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31572441..31573156 | 33..750 | 99 | -> | Plus |
| 3R | 31573254..31573645 | 751..1129 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:26 Download gff for
FMO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27398163..27398878 | 33..750 | 99 | -> | Plus |
| arm_3R | 27398976..27399367 | 751..1129 | 94 | | Plus |
