FMO02816.5prime Sequence
1226 bp (1067 high quality bases) assembled on 2008-06-10
> FMO02816.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGAACCACCACT
CGAACGGAGGCGGCAGTGCTGGAAACAGTAGCGGAAGCCTAAGAGGAGGC
GGTGCCCATGGAGGCGGCGGCGGAGGAGGAGACTATTCCGGAGACGATCG
CAGCGGAGGCGGCGAGGAGCGGGAGCGTCTGGAGAGTGACTTGCACGACA
AGCCCACCTACCTGCTGGAACACCTGGCCACCTTCACGGTCAACAAGGAG
TCCGGCATTGTGTATCCGGCGGACGGAATGCGTCGCCTCCTTCAGCTGGA
GAAGACCACGGGTATTTGGTCGCAGAAGATGCAGCTCTGCCTGGACTATC
AGTGGGTGCTAATTATGGACTATGAAACAGGGAACATAATCGAAAGATTC
CCCGCCTCCTTGGTTCAGGAGCCCACCGCATTCACCTCGAATGACGCCAT
GGAGCTATACAACAACATTCTGGTCTTTATCGTATCCGGAGGCGGTGGTT
CTCGCTCCGAGATGCACATATTCCAGTCACAAAGTGTGTCCGCCGTTCAC
CTGGTTGAGGATCTGAAGCAGCTGAGAAGCGGCAAGATGATAACGCAGCA
GCGCGGTGCCACACCCACTCAATCAGGAGGCGGAGGAGCCTCCAGCATGG
CCATGATGATGAGCAAAACCTCCTCGTCCTCGTCGCATAGTAGAGTGGAG
CTGCACCAGCACAGGGAGCAGCGGGCAGAGCGCGAGAGGGAGCGTGATCG
AGACCGTGAGCGCGAAAGCCACCATCACATGCACCAAAGGAGCAGCATGG
AACAGTATGGAATCCGTGCCGGAGTAGGAGTTTCTGGCGATGACGTTGCC
CACATTAGTGGCGAGACGGATTCGGAACACGGTGGGATTGGGGGCGGTGG
CGCAACGGAGCGCGATGAGACTAGCTCCACGTCCAGCGAGAAGTACGAGC
GGGATGTGGCTGTGCTGAATCACTGTTTCGATGACATCGAGAAGTTCATA
GCTCGTCTTCAGCACGCCGCCGCGCTTCCCGGAGCTCGAGCGCCGTCGTC
GCAATCGAAGTCGAAGAAAGGATCCGGGGGAGGATGCTCCTTTGAGACCC
GGCCTCCCCAGGAGGATCGTGAATTCTTGCCAGTTTAGCTGTCATTACCC
TGCTGCAGTAGCCATCCCGATCCCACGCCTCCGACCTGTGTGGCTATTAC
CTCTTTCACGCGGCGGTTGTCCCCTG
FMO02816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 249..1338 | 34..1114 | 5205 | 99 | Plus |
| aru-RD | 3026 | CG4276-RD | 372..1461 | 34..1114 | 5205 | 99 | Plus |
| aru-RA | 2922 | CG4276-RA | 268..1357 | 34..1114 | 5205 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 863573..864137 | 1083..524 | 2610 | 99.1 | Minus |
| 2L | 23513712 | 2L | 864398..864746 | 382..34 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 864195..864339 | 526..382 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:30 has no hits.
FMO02816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:03 Download gff for
FMO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 262..1357 | 28..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:13 Download gff for
FMO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 262..1357 | 28..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:13 Download gff for
FMO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 863538..864134 | 527..1114 | 98 | <- | Minus |
| 2L | 864195..864338 | 383..526 | 100 | <- | Minus |
| 2L | 864398..864752 | 28..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:03 Download gff for
FMO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 863538..864134 | 527..1114 | 98 | <- | Minus |
| arm_2L | 864195..864338 | 383..526 | 100 | <- | Minus |
| arm_2L | 864398..864752 | 28..382 | 99 | | Minus |
