FMO02819.5prime Sequence
1255 bp (1053 high quality bases) assembled on 2008-06-10
> FMO02819.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGAACTCG
AGGAGAAGGAAACCCCGCCCACTGAGACGACAGCCGCCCAGCAAGAGGCG
CTAGAGGAGCCCAAGGAAACGGACAAAATGTTGGACAAAAAAGAGGACGC
CAAGGAGAAGACACCCAGTCCACAGACCTCCAAGCCCGCATCTCCAAATG
CCGGCAAGAAATCCTCACCAGTGGCCGAGAAAAAGATCGACGATGCTGAA
TTAGCGAAATCCAAATCAGGCAATGGAGAAGAGATTATCGATATTCCCGC
CGAGAATGGCACAAAGCCAGACAGCGCTGATGACAAAAAGATAAGCAAGG
AGGAGCGCGAGGTCAAGCCCAAAAAGATACCGATCGGAGGTCTCAAACTG
CCTGGTTTCTTCATGAAGAACAAGCCGAAGGCAGATGGTGATGGGGCCGA
GGGCGAGCTGCTCGAAAAGGAGAAGGAAGAGGATAAGGATAAGGAAGCCA
ATGGAGATGCCGCCACCGGTTCCGGCAAGGACGAACAGAAATCTCGCCCA
GGACTGGGAGAACGCCTGCGCAGCTTCTTTGCCCGCAAGCCATCCGCCGA
AAAGGAAAAGAAGCAGCTGGTCAACGGTGACGCGGATGCCAAGTCTGAAG
CCACAGCTGAAGCAACGCCCGCTGAAGATGCCTCCGATGCACCACCAAAG
CGTGGACTTTTGAACGCCATCAAGCTGCCAATCGCTAACATGATACCGAA
AAAGAAGAGCAACGATGATGTGGAGCTGGGCTTGGGCAAGGCCGGTCTGG
CCTCGATGGAGACCCTCGATGATTCCCTTAAGGATCAAGACACAGTGGAT
CGGGCTCCCGTCAGACCAACGGTACCGAGGAACTAAAGGGCGAGCTAAAG
GATGAGAAGCTGGCGGCGGAGGAAAAACTAGCCGCCGGAGGAGGAGGAGC
AAACCGACCCGTCTCCTTGCTAACCCGTCTGCGTGGCTACAGTGCAGTGT
GACGATGCCCTGATGTGTTGGCATCCTGCTATTTGTGCTCTGTGGGCGTG
ATTGTTTTGTACTAACCACGAAGACTTGAACCTCGCCGCCCCCTGCGGAA
GAACGCTACATAATGGCAGTTGACGGGGTGCGGAACTTGGTGAGGGGCGT
TAGGAAAAATGGGAGCCCTTGGCCTCTGCAATCGATGGCAAGCCACGTAG
AACAGACTGGAATGGAAACCCGCGCTTGAAACTGATATGTGATGTGACCA
CTCCC
FMO02819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 3523 | CG9704-RC | 513..1650 | 38..1171 | 5105 | 97.4 | Plus |
| Nrt-RA | 3177 | CG9704-RA | 167..1304 | 38..1171 | 5105 | 97.4 | Plus |
| Nrt-RB | 4158 | CG9704-RB | 513..1650 | 38..1171 | 5105 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16773757..16774366 | 38..647 | 3050 | 100 | Plus |
| 3L | 28110227 | 3L | 16774429..16774923 | 647..1134 | 1745 | 94.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 660..700 | 462..502 | 115 | 75.6 | Plus |
FMO02819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:46 Download gff for
FMO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 504..1632 | 28..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:06 Download gff for
FMO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 504..1632 | 28..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:06 Download gff for
FMO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16773737..16774366 | 22..647 | 98 | -> | Plus |
| 3L | 16774430..16774939 | 648..1152 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:46 Download gff for
FMO02819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16766837..16767466 | 22..647 | 98 | -> | Plus |
| arm_3L | 16767530..16768039 | 648..1152 | 95 | | Plus |
