FMO02828.5prime Sequence
1216 bp (1051 high quality bases) assembled on 2008-06-10
> FMO02828.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGCGTGTAGCC
AAGCCGAAAGCCGCCGCTCCGGCCAAGAAGGTGGTGTCGGCCAAGAAGGC
CAAGAGCAAGCTGTACAAGATGCCGGAGAAGGTGAAGGAGGGCACAGTTT
TCACCGATTTAGCCAAAGGCCAGTGGCGCATTGGACCCTCGATCGGAGTT
GGAGGATTCGGTGAGATCTACGCGGCTTGCAAAGTGGGTGAGAAGAACTA
CGATGCTGTGGTCAAATGCGAGCCACATGGCAATGGTCCTCTGTTCGTGG
AGATGCACTTCTACCTGCGCAACGCCAAGCTGGAGGACATCAAACAGTTC
ATGCAGAAGCACGGTCTCAAGTCCCTGGGCATGCCCTACATACTGGCTAA
TGGTTCCGTGGAGGTCAATGGTGAAAAGCATCGATTTATAGTCATGCCGC
GCTACGGCAGCGATTTGACCAAGTTTCTGGAACAGAACGGCAAGCGACTG
CCCGAGGGCACTGTCTACCGACTGGCCATTCAGATGCTGGACGTCTATCA
GTACATGCACAGCAACGGCTACGTTCATGCCGATCTTAAGGCAGCCAACA
TACTGCTGGGCCTGGAAAAAGGCGGCGCTGCGCAGGCGTACCTGGTGGAT
TTCGGCCTGGCCTCACACTTCGTCACCGGTGACTTCAAGCCGGACCCCAA
GAAGATGCATAATGGCACCATAGAATACACATCAAGGGATGCTCATCTGG
GCGTGCCAACCAGACGAGCTGATCTGGAGATACTCGGTTACAATCTCATC
GAGTGGCTGGGCGCGGAGTTGCCGTGGGTCACGCAGAAACTACTGGCTGT
ACCCCCCAAAGTTCAAAAGGCCAAGGAAGCATTTATGGATAACATAGGCG
AGAGTCTGAGACGCTGTTTCCGAAGGAGTGCCCCCGCCAATTGGGGATTT
CATGAGTATGTCTCAAACTAACACACAACCAGGAGCCGACTACGACAGTG
TCGCAGTTGGTTCTCAAGTGCGCTGAGCAGCTGAATTCCAAACACGGAGA
ATCTCGACTTTAGATGAAGCCCAGACAGCAGCACAAATATCTAGTCGTCG
CCCGAGCCAGGCAGCACAGCCAGGAGGCTAAAACTGAATCGCCGGTCTTG
AACTCTACTGACGAAAATCTCGCCAGCGGAATGAATGATGAGAGAGGGAT
AATTCTCCATCTCCGA
FMO02828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 102..1272 | 36..1178 | 5010 | 96.6 | Plus |
| ball-RA | 2027 | CG6386-RA | 164..1334 | 36..1178 | 5010 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26865433..26866234 | 1062..270 | 3520 | 98.3 | Minus |
| 3R | 32079331 | 3R | 26866290..26866524 | 270..36 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:04 has no hits.
FMO02828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:00 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:01 Download gff for
FMO02828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1238 | 28..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:33 Download gff for
FMO02828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1238 | 28..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:33 Download gff for
FMO02828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26865415..26866234 | 270..1078 | 98 | <- | Minus |
| 3R | 26866291..26866536 | 23..269 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:01 Download gff for
FMO02828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22691137..22691956 | 270..1078 | 98 | <- | Minus |
| arm_3R | 22692013..22692258 | 23..269 | 97 | <- | Minus |
