FMO02832.5prime Sequence
1219 bp (1003 high quality bases) assembled on 2008-06-10
> FMO02832.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCCTGGCA
TCTTTGTCCACTGGTGTGATTGCTCGCATTATGCATGGCGAGGTTGTGGA
TGCCCCGGTTCTCCAGATCCTGGCAATCAAGAAGATTAACAGCGCAGCGG
ACTCAGAGCGCTATCGCATCCTAATCTCCGACGGCAAGTACTTTAACAGC
TATGCGATGCTGGCCAGTCAGCTGAACGTGATGCAGCACAATGGAGAATT
AGAGGAGTTCACCATTGTCCAGCTAGATAAATATGTGACCTCACTGGTAG
GCAAGGACGGAGCCGGAAAACGCGTTCTCATCATTTCCGAACTAACTGTG
GTGAATCCTGGCGCCGAGGTTAAGTCCAAAATTGGCGAACCCGTTACGTA
TGAAAATGCAGCCAAGCAGGATCTGGCGCCTAAGCCAGCAGTAACATCTA
ATTCCAAGCCAATTGCCAAAAAGGAACCGAGCCACAACAACAATAATAAC
ATAGTAATGAATTCCTCTATTAATAGTGGAATGACACATCCCATTTCTAG
CCTAAGTCCCTACCAAAATAAGTGGGTGATTAAGGCTCGCGTGACCTCAA
AATCCGGCATTCGCACCTGGAGCAATGCCCGCGGCGAGGGCAAGTTGTTC
AGCATGGATTTAATGGACGAATCGGGCGAAATTCGGGCCACTGCCTTCAA
GGAACAGTGCGATAAGTTCTACGACCTCATTCAAGTGGATAGCGTGTACT
ATATATCAAAGTGTCAATTGAAACCGGCAAACAAGCAGTACTCTTCGCTG
AACAACGCCTACGAGATGACTTTTTCCGGTGAAACAGTTGTCCAGCTTTG
TGAGGATACCGACGATGATCCCATACCGGAAATTAAGTACACCTTGTTCC
TATTTCCGATGTGTTGGGTATGGAAAATAAAGCAGCGGTAGAACACAATA
GAATTTGCAGGGAGTGGGCGAGTTGCAATCATTTCGTAGCTCGCACACAA
ACTAGGAAATCAAGAAACGGGACATACCTAGTGAACATGGAGTACTTCGG
TCATCAGCTTTGAACCTTTTGGGGGATGATGCGGTTACTTTGACGTCATG
GCAGCTTGTGATCTGGTCAAGGGAACAGCATTACGAGTTCAATGCGAGTT
CCTGGACTGGCGGTGCCTATCATGAAATACTCGATATCCGAGTCACTATA
GGTGCCCGCGTGTATTTTG
FMO02832.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 82..1195 | 39..1144 | 5020 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8263158..8263971 | 1127..320 | 3245 | 96.8 | Minus |
| 3R | 32079331 | 3R | 8264029..8264273 | 319..75 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:03 has no hits.
FMO02832.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:42 Download gff for
FMO02832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 71..1195 | 27..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:54 Download gff for
FMO02832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 71..1195 | 27..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:54 Download gff for
FMO02832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8264029..8264273 | 75..319 | 100 | <- | Minus |
| 3R | 8264335..8264370 | 39..74 | 100 | <- | Minus |
| 3R | 8263139..8263971 | 320..1144 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:42 Download gff for
FMO02832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4088861..4089693 | 320..1144 | 96 | <- | Minus |
| arm_3R | 4089751..4089995 | 75..319 | 100 | <- | Minus |
| arm_3R | 4090057..4090092 | 39..74 | 100 | <- | Minus |
