FMO02834.5prime Sequence
1072 bp (1056 high quality bases) assembled on 2008-06-10
> FMO02834.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACAAGATGCG
GATATTGAAGGAAAGTCGCCCCGAGATAATCGTCGGTGGCAAATATCGGG
TGATCAGGAAGATTGGAAGCGGATCGTTTGGCGACATTTACCTGGGCATG
AGCATCCAGAGCGGCGAAGAAGTGGCCATCAAGATGGAGAGCGCCCACGC
CCGCCATCCGCAGCTGTTGTACGAGGCCAAGCTGTACCGCATTCTGAGCG
GCGGCGTTGGATTCCCTCGTATACGTCACCATGGCAAGGAAAAGAACTTC
AACACCCTGGTCATGGACCTGCTGGGACCCTCGCTGGAGGATCTGTTCAA
TTTCTGTACGCGCCATTTCACAATCAAAACGGTTCTGATGCTCGTCGACC
AGATGATCGGACGCTTGGAGTACATCCATCTCAAGTGCTTCATCCATCGC
GACATCAAGCCGGATAACTTCCTAATGGGCATTGGTCGGCACTGCAATAA
GCTGTTCCTGATCGATTTCGGTCTGGCCAAGAAGTTCCGCGATCCGCACA
CGCGCCATCACATCGTTTACCGCGAGGACAAGAACCTCACCGGCACTGCC
CGCTATGCCTCGATCAATGCCCATCTGGGCATCGAGCAGTCGCGGCGTGA
CGACATGGAATCGCTTGGATACGTGATGATGTACTTCAATCGCGGCGTAC
TGCCATGGCAAGGCATGAAGGCCAACACCAAGCAGCAGAAATACGAGAAG
ATCTCCGAAAAGAAGATGTCCACGCCCATCGAGGTCCTCTGCAAGGGCTC
GCCGGCCGAGTTCTCCATGTATCTGAACTATTGTCGTAGCCTGCGCTTCG
AGGAGCAGCCAGATTACATGTACCTACGTCAATTGTTCCGCATACTGTTC
AGAACGCTGACCATCAGTATGACTACATCTACGACTGGACATGCTGAAGC
AGAGACCCATCAGGTCACCCAATCCAGCTATACTCTGGAGCAATTGACAG
ACAAGAGAGCAAACGCAGCCCCTGATCGCGACGCAGCTTTCTAGACATTC
GTTTGGCGCCGGGTCCAGTAGT
FMO02834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1997 | CG2028-RG | 202..1209 | 37..1030 | 4700 | 98.6 | Plus |
| CkIalpha-RF | 1997 | CG2028-RF | 202..1209 | 37..1030 | 4700 | 98.6 | Plus |
| CkIalpha-RD | 2232 | CG2028-RD | 437..1444 | 37..1030 | 4700 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12655377..12656152 | 115..890 | 3880 | 100 | Plus |
| 3R | 32079331 | 3R | 31057085..31057613 | 836..308 | 665 | 75 | Minus |
| X | 23542271 | X | 12655238..12655317 | 37..116 | 400 | 100 | Plus |
| X | 23542271 | X | 12656333..12656445 | 890..996 | 270 | 92.9 | Plus |
| 2L | 23513712 | 2L | 17555095..17555188 | 532..439 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:08 has no hits.
FMO02834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:00 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:40 Download gff for
FMO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 334..1352 | 29..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:50 Download gff for
FMO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RD | 433..1451 | 29..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:50 Download gff for
FMO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12655234..12655316 | 29..115 | 95 | -> | Plus |
| X | 12655378..12656152 | 116..890 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:40 Download gff for
FMO02834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12549267..12549349 | 29..115 | 95 | -> | Plus |
| arm_X | 12549411..12550185 | 116..890 | 100 | -> | Plus |
