FMO02839.5prime Sequence
1230 bp (1037 high quality bases) assembled on 2008-06-10
> FMO02839.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTTCTACACG
AGTAAGACGGATGTGACTTCCATTTTAAAGACGTTTTCTGGCGTAAAACG
AAATCAGGCAAATGCCGTGGCCATCAACAAAGTTCGATTTTCCACACCCA
AAGAGAAGGGGCTCGCAGAATCAGTGCGCGTTGCCCTAGAAGAACGAAAT
TTCCATCTGGTCAAGGAGTTCACATACTTCCTCCGGGAAGCAGAACTCAG
CGATGATGAGGTTGTAATAATCATAAAAGATGCTAAACGAATTGTTCATA
ATTTGACTCCAGAATTTGTAACCGTTGTCGAGGCGTTACTGTCCCTTAAC
TGGAAGAAAAGAAGTTCAGAGATAATCGAAGCTTATACTGAATTTTGTAT
CGAACTAATGGTGACCCATAATAGATATTTACCGATTGGAGTCTCTAAAC
TAATTGTCCACTGGATTCCTGGAGATATGGATGAATCCGATTGGGTCCAC
GGATGCCCTTCGGAGCACGTGCGAAATGAGTTGAAACCCATCCATAAAGT
ACTGGATCGCATCTTAACTGCCGTGCCAATGGCTTTCGATATTATCATAG
ATGCCATATCCGCCAAATTCCCCTATTTCAAAAAGCCGTACCATGTGACG
GCAGGGTATCTGTATAACGTGCTTTGGTTATTAGAATACAAGCCTATTTT
CGAAGAACTTGTTTTTCAACTAGTTTTACAAAAGCTTTTATTATTAGATG
TTAATGCTCCAAAAGATGAAATTGAATTAGAAATGAATGATGAGGAGGAA
AAGGTGGAAGCGGACACCTTGTTTGAAATCGACGATGTATGCGCCGAAAA
TGTACCCAAATCTGAAAAATCTGTGAGTCATCCTGTTGGCAAACCTTGGA
TGTATGCCTATTCTTGCTTTATAGTTTTTTGATGGCAATGTCGCTTTAAT
GAAAATAGTAGCGAAGATCAGCGACGACTGCCCACCGATTGTTTAGATGT
TACTTTATTTGTTCGACGAGGTGTTATTGCTCAGCCCAACCCGCATCATG
TGCATTCATCCTATTTATCACTAGTCTGCGTCGGTATATCCGAGCCTTTG
CTGATTCTTAGGGACTAAGTTCAAATCGATGTATCCTTGTAATTCGAACT
GGCTGCGGGGGATAACTGCTAGCTTTTATCTCCGCAGATTTGCCGCTAAC
CGTATATCTTCTACCTAAAAAGTTGACACA
FMO02839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tif-IA-RA | 2140 | CG3278-RA | 224..1444 | 36..1228 | 5035 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22250372..22250854 | 252..734 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 22253194..22253533 | 734..1066 | 1260 | 96.2 | Plus |
| 2L | 23513712 | 2L | 22250099..22250315 | 36..252 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:55 has no hits.
FMO02839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:00 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:37 Download gff for
FMO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1299 | 36..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:46 Download gff for
FMO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1299 | 36..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:46 Download gff for
FMO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22250099..22250314 | 36..251 | 100 | -> | Plus |
| 2L | 22250372..22250853 | 252..733 | 100 | -> | Plus |
| 2L | 22253194..22253533 | 734..1066 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:37 Download gff for
FMO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22250099..22250314 | 36..251 | 100 | -> | Plus |
| arm_2L | 22250372..22250853 | 252..733 | 100 | -> | Plus |
| arm_2L | 22253194..22253533 | 734..1066 | 96 | == | Plus |
