FMO02840.5prime Sequence
828 bp (828 high quality bases) assembled on 2008-06-10
> FMO02840.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGTTGACTACTATAA
AATTTTGGATGTTTCGCGATCCGCTACCGATAGTGAAGTGAAGAAGGCAT
ATCGAAAACTGGCACTAAAATGGCACCCAGACAAGAATCCCGACAACCTG
GATGAGGCCAACAAACGCTTCCGCGAGCTGTCCGAAGCCTACGAAGTTCT
TTCCGATGAGAAAAAGCGTCGCATATACGATGAGTATGGCAAAGATGGAC
TGGGCGATCGTGGCCAGAGTCGCTCGCATGCCCGCCACCATTATAGCACA
CACGATTTCGATGACTTCGATATTTTGGGCGGCTTTCAGTTTGCATTCCG
CCCGCCCGAGGAAGTGTTCCGTGAGTTCTTCGGCATCCACTCGCCCTTCG
CCGACTTATTCCGAGATGCCAATGGACATTCGAATGGCAGCACAAGCGGC
TCGAGTGGCAGTCGACGCAATGGCGGCAGCAGTGGATCATCTCGCCACCA
TCATCATCACCACCAGCACAAAGTGGCCAGTCCGTTCGGGGCTCCAATGC
TTAACTACTCAATGATGGACTTCTTTATGCCCACCAGCGGCTTCACCTCG
TTCTCGTCGATGACCCACGGCAATGGCAGCAGCGGTGTCACCCACATCTC
CAGCGGACCCGGTGCCAGTGTCAAGCGCACCTCCACTTCGACGGTGTTTG
TGAATGGCAAGAAACTGATGACCAAACGGGTCGTCGAAAACGGCAAGGAA
ACTGTCTTTTCATATGAAAATGATGTTCTGAAATCAAAGACTGTGATGGG
CTCCCTTCAAGCAAGCTTTCTAGACCAT
FMO02840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..958 | 32..810 | 3895 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..1172 | 32..810 | 3895 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..1155 | 32..810 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 729..414 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205032 | 415..208 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 208..99 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16204300..16204382 | 810..728 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 98..32 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:32 has no hits.
FMO02840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:48 Download gff for
FMO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8448-RA | 197..987 | 24..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:50 Download gff for
FMO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..1160 | 24..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:07 Download gff for
FMO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 370..1160 | 24..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:07 Download gff for
FMO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204295..16204381 | 729..817 | 96 | <- | Minus |
| 2R | 16204442..16204754 | 416..728 | 100 | <- | Minus |
| 2R | 16204825..16205031 | 209..415 | 100 | <- | Minus |
| 2R | 16205710..16205819 | 99..208 | 100 | <- | Minus |
| 2R | 16205901..16205974 | 24..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:50 Download gff for
FMO02840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091800..12091886 | 729..817 | 96 | <- | Minus |
| arm_2R | 12091947..12092259 | 416..728 | 100 | <- | Minus |
| arm_2R | 12092330..12092536 | 209..415 | 100 | <- | Minus |
| arm_2R | 12093215..12093324 | 99..208 | 100 | <- | Minus |
| arm_2R | 12093406..12093479 | 24..98 | 96 | | Minus |
