FMO02841.5prime Sequence
1225 bp (1053 high quality bases) assembled on 2008-06-10
> FMO02841.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACGTCTATGGA
GCAAAATCGTTTACAAAACTTCAAAAACAAAGGGAAAGACCAGGATGAAA
TGCGACGTCGGAGAAATGAAGTCACCGTTGAGCTGAGGAAGAACAAGCGC
GAAGAGACCATTCTCAAGCGTCGCAATGTGCCCAATTTGGACTCGAACAC
AGATGAGGAGGAGCAGTTGTCCTCGTCCATTGACCTGAAGAAGCTGGCAA
AGGCAGCCGCAGACGCCACCAAGCCGGAACAGCAACTGGCCGCTGTTCAG
GCTGCCCGCAAGCTGCTGTCGTCGGACAAGAATCCACCCATCAACGATCT
GATCCAAAGCGACATTCTGCCCATCCTGGTGGAGTGCCTCAAACAACACA
ATCACACAATGCTCCAGTTCGAGGCCGCCTGGGCCCTGACCAACATTGCC
TCTGGCACATCGGCTCAGACCAACGAGGTTGTTGCCGCCGGTGCCGTGCC
GCTCTTCCTTCAACTTCTCAACTCGCCCGCTCCCAATGTTTGCGAACAAG
CCGTGTGGGCCCTGGGCAACATCATAGGCGATGGTCCTTTGCTCCGCGAT
TTTGTCATTAAGCACGGAGTCGTGCAGCCACTTTTGTCGTTCATCAAGCC
AGACATCCCCATCACATTCTTGCGCAATGTAACATGGGTTATTGTGAATT
TGTGCCGCAACAAGGATCCGGCTCCCCCGACAGCCACCATTCATGAGATC
CTGCCCGCACTCAATGTGCTCATTCATCACACCGACACGAACATCCTGGT
GGACACGGTCTGGGCCATCAGCTATTTGACTGACGGTGGCAACGATCAGA
TCCAGATGGTCATTGAAAGTGGAGTTGTACCCAAGCTGATACCACTGCTG
GGCAACAGCGAGGTCAAGGTACAGACAGCCGCACTGCGGGCTGTTGGCAT
ATTGTGACTGGATCGGATGAGCAGACACAGGTTGTGCTCAACTACGACGC
GCTCTCTACTCCCGGGCTGCTCTCGCATCCCAGAGAAGATCGAAAGAGCG
TTTGTCTTCATATAAACCGCTGAATCATCGCAGTGCAGCGTATACGTGGT
CTCTGCCCAAATTATCGAGACTTAGCCAGGGCAGTCCAGAACCGAAAGGA
GCGTCTGGCATCGCAAACCGGACCTTACGCAACCGTAACAGCCTCTCACC
CTGAATACAAGGAGAAGGAGCGGCA
FMO02841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 197..1223 | 27..1046 | 4925 | 99 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 119..1145 | 27..1046 | 4925 | 99 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 184..1210 | 27..1046 | 4925 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9576178..9576709 | 1006..476 | 2610 | 99.8 | Minus |
| 3R | 32079331 | 3R | 9576766..9577148 | 479..97 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577277 | 97..27 | 310 | 95.8 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 407..461 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:00 has no hits.
FMO02841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:28 Download gff for
FMO02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..1193 | 27..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:08 Download gff for
FMO02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 184..1193 | 27..1032 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:08 Download gff for
FMO02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9576149..9576707 | 478..1032 | 99 | <- | Minus |
| 3R | 9576768..9577148 | 97..477 | 100 | <- | Minus |
| 3R | 9577208..9577277 | 27..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:28 Download gff for
FMO02841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401871..5402429 | 478..1032 | 99 | <- | Minus |
| arm_3R | 5402490..5402870 | 97..477 | 100 | <- | Minus |
| arm_3R | 5402930..5402999 | 27..96 | 95 | | Minus |
