FMO02842.5prime Sequence
1205 bp (1044 high quality bases) assembled on 2008-06-10
> FMO02842.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATAGCTGTCG
AAGGATGTGCACATGGCGAGCTGGAACGAATATACGACACCATAGAGGGC
ATCGAAAAGGTTGGCGGCACCAAGATCGACTTGTTATTGTGCTGTGGCGA
TTTTCAGTCCACCCGGAATCTGGAGGATTTGCAGACGATGGCTGTACCAA
AGAAGTACCTGGATATGTGCTCCTTTTACAAATACTACAGTGGCGAGCTG
GTAGCACCAGTGCTGACCATATTCATTGGCGGCAACCATGAGGCCTCCAA
TTACCTGCAGGAGCTCCCATACGGCGGTTGGGTGGCTCCAAATATTTACT
ACCTTGGTTATGCCGGCGTCGTCAATGTAAACGGTGTTCGGATAGCTGGA
ATAAGCGGAATCTTCAAGGGTCACGACTTTTTGCGCGGCCATCACGAATT
CCCTCCGTATACCGATTCCACGTGTCGCAGTGTCTACCATGTGCGGCAGC
TAGAAGTCTTTCGGCTGAAACAAATTTCCGGGCGAGTTGATATTTTCCTG
TCCCACGACTGGCCCACCGGCATCTATGAATACGGAAACAAGGCGCAACT
GCTCCGCAAGAAACCATTTTTTGCTGCAGACATGGAAAGCGGGAAGCTGG
GTAGCCAGCCACTGGAGGAGTTACTGAAAGCGGTCCAACCGGCCTACTGG
TTTGCTGCCCATTTGCATTGCAAGTTTGCCGCTTTGGTGCCGCACAATCA
CAGCCAGAAGCTAGGAGATGCTGAATCTTCCTCTTCCAGCAGCAGCAGTG
AAGATGAAGACGAGGAAAGGGAGAAGGTAAAGAAAGCTGCTCCTGTACCT
CCACCATCCAAATCTGTTCCCGTGACCAAGTTTCTGGCTCTCGACAAATG
CCTGCCACGTCGTGCTTTCCTGCAAGTGTAGAGGTACCCAGTGACCCCAT
CGAAGCACTCCCCGCCTGCATACGACGCAGAGTGCTAGCCATCTGCACAG
TACAATCACTTGATTTCAGTGAGGAGATATATACCTGCCCGAAAAAGCGG
AGAGTTTACGAGCGATCACTTACCCCCACTGAGAGGACTAAGCATGACCG
CAGTTCGACTCAGTCCGAGACTGAACCCAGGCAGCTCGATCCCGGGACGT
GATAGCAGTTTGGATAGCAAGGTCACATAACACAGACAAATCGTTCTGTG
TCCAC
FMO02842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..1159 | 34..1082 | 4880 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122967 | 224..1022 | 3680 | 98.9 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 34..231 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1623..1655 | 946..914 | 111 | 81.8 | Minus |
FMO02842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:06 Download gff for
FMO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..1169 | 34..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:10 Download gff for
FMO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..1169 | 34..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:10 Download gff for
FMO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121918..8122115 | 34..231 | 100 | -> | Plus |
| 3L | 8122171..8123050 | 232..1090 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:06 Download gff for
FMO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115018..8115215 | 34..231 | 100 | -> | Plus |
| arm_3L | 8115271..8116150 | 232..1090 | 97 | | Plus |
