FMO02845.5prime Sequence
1231 bp (1053 high quality bases) assembled on 2008-06-10
> FMO02845.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGTTGCAA
TCCTTGAGTCTGCACGCGGATAAACTAAGCGGCAATTCACCAGCAGCAGC
AGCAGCAACTGGAGCAGCAGCAGCAACATCAGAGGCAACAGCAGTAGCAT
CCGCAGCAGCAGCAACAACAATGCTTGCAACGGCACCTGTTGCCCATGTT
GCTAATGGCAACAACAGCAATTCGAGTGCCGGCAGCAGCAGCAACAGCAA
CAGCAGCAGCAACAACCACAGCCTCTACAGCAATAACAATTTAAATACAG
GCAACAATAGCCAGCAGCAGCAGCAGCAGCAGCAGCAACATCCGCAAATA
CTGCCGGTCAAGTACGAGTATTTAGAGAATCTAACGAGCTCGGGCGCAAC
TTCAGGTGCCATTGCAGCGACAACAACTTTCACGGGAGCTGCGAAAAGTT
TTCATCCCTATTTGCGGCCCACCGGCAGTGGCAGCAACAGCAACAACAGC
ATCGCAGCATTATCTACAACAACGGCAGCAACAGCGGCTAAAATGTCGAC
AACATTGTTTGAGACACTCTTGCACAACCAAATAAATTCCAGCCCAATAG
CACTGCCAGCAGCAACGGCAATCGCAGCAATATCTGCAGCAGCAACAGCA
GCAACAGCAACACCAGGCACCGCAGCAACCGCAGCAGCTGCCGCTGCAGC
AGCACCGTCAACGCAGCTGAATTCCAGCATTAATTCCAGAACTTCATTAG
GCGACCAGGGTGGTGCAATTGTTGTTGTTACCCCCGCACCACCCGTTGCT
GCACCACCAACTGGCGGCCCAAATCGCAACCAAAGTCCCACGCGTGACTG
CTCGGTCAAAATGGAGCTCATGGAATCGACCAGCCCGGATTCGATCAAGG
ATCAGCCGGATGCGGACAATATCAGATGTTCGTGGCCAAATACCGAAGAC
CTGAGACGAGACGAGGCTACGCCAATGTTCGAGCAGTTCGGACCCGTTCA
CACACTGAATGTGCTACGGGACAGGGTCACATCGATAGCCGGAGGTGCTG
TTTTGTCACTACTAATACAAGAAAGGGCGCCCCTGCGCGCCAGGACGCGT
TGCACAACATCAAGACGTGATGGGATGCACCATTCATCAATGAAGCGGCG
GATGCGGAACGATGAACGTTAACCTTCCGTGGCAGTCGTAAACAAAGTAC
ATCGCAAGCCACAAGGTAGTGAGGGCAGCTC
FMO02845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RM | 4146 | CG43065-RM | 532..1656 | 39..1153 | 5190 | 98.1 | Plus |
| bru-2-RL | 4177 | CG43065-RL | 532..1656 | 39..1153 | 5190 | 98.1 | Plus |
| bru-2-RK | 4085 | CG43065-RK | 908..2032 | 39..1153 | 5190 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12351996..12352783 | 39..826 | 3940 | 100 | Plus |
| 2L | 23513712 | 2L | 12358040..12358253 | 826..1036 | 890 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2856 | 101..712 | 576 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6923 | 70..281 | 410 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7226 | 88..543 | 379 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7217 | 209..690 | 366 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 138..345 | 361 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6910 | 155..356 | 353 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2983 | 88..554 | 292 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2688..2968 | 74..346 | 260 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1153 | 208..289 | 187 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1623 | 209..298 | 184 | 68.9 | Plus |
FMO02845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:52 Download gff for
FMO02845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31761-RC | 463..1579 | 39..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:35 Download gff for
FMO02845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..2024 | 39..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:44 Download gff for
FMO02845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..2024 | 39..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:44 Download gff for
FMO02845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12351996..12352783 | 39..826 | 100 | -> | Plus |
| 2L | 12358041..12358261 | 827..1043 | 96 | -> | Plus |
| 2L | 12359601..12359670 | 1044..1113 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:35 Download gff for
FMO02845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12351996..12352783 | 39..826 | 100 | -> | Plus |
| arm_2L | 12358041..12358261 | 827..1043 | 96 | -> | Plus |
| arm_2L | 12359601..12359670 | 1044..1113 | 93 | -> | Plus |
