FMO02856.5prime Sequence
1054 bp (1054 high quality bases) assembled on 2008-06-10
> FMO02856.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTCGACGC
AGGAAAAACCGGAGGAGCTGGACAGGATCCAGAAGAGGGTCAACAAGATC
CTTGAGGCTCGCCTGGAGTCGGACAAGGACACATTGGATGCTCTGAGTGG
TCTGTCCACTTTCTTCACGGAGAATACGCTGCAGAATCGCAGGAATCTGC
GTAGCCAGATCGAACACCGCTCCGTGGGCATCAACGAGAACTTTCTGAAG
GCCTTCCGCCAGGTGAAGCTCTCGCTGGATGCCGTGTGCGAAGATCTGGA
CACGATGGCCACGTCAGTAGAGACGATGAAATCGGATCTGGAGACCTCAA
AGGCGCTCACCAAGGATCTGATCAAGCAGACCAACACCATGCAGCGGGAG
AGGGACCGCTTGGAGGTGCATAAGCAGATTGCGCAAGCTTTTCTGGCTCG
TTTTCAGCTAAGCGGAGCCGAGCACCAGTTACTATATGGCGCTGCCAAAG
ATGCACCCATTGTGGCGGACTTCTTTCGCGTATTGGACAGAGTACAAAGC
ATTCACGCTGACTGCCGGCTGCTGATGCAGTGTGGATACCAAACAGCAGC
CATCGACATCATGGAGGAGATGACATTGCATCAGGAGGGCGCTCTGGAAA
GGCTCTACCGATGGACTCAGAACCACTGTCGCAGTTTGGAAAACAACGAA
ATAGGTCCGCTGATTGTGGAAGCCATGAGCCGGCTGCAGGACCGTCCGGT
GCTATTCAAATACGTCATTGACGAATACGCCATTGCGAGAAGAGCGGTTT
TGGTGCGTCAGTTCATTGAGGCCTTGACGGAAGGGGGTCCTGGAGGGAAC
CCCAAGCCCATTGAGCTGCATGCCCCACGATCCGAAGAGATATATTGGCG
ATATGTTTGCGTGGCTGCATCAGAGCATTCCCACCGAAAAGGAGAACCTA
TCTTTGCTGTTCAAAAAGTGCGATAAGCAGGTAAGATAAGAAATGCATAC
ATTATGCACCAAAATAGTGCTCTTCGTTTGCAGCAGCTTTCTAGACATTC
GTTT
FMO02856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1968-RB | 2087 | CG1968-RB | 22..1015 | 38..1029 | 4875 | 99.6 | Plus |
| CG1968-RA | 2028 | CG1968-RA | 22..964 | 38..981 | 4695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9286994..9287627 | 126..759 | 3170 | 100 | Plus |
| 2R | 25286936 | 2R | 9287683..9287954 | 760..1029 | 1165 | 98.5 | Plus |
| 2R | 25286936 | 2R | 9286848..9286938 | 38..128 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:13 has no hits.
FMO02856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:41 Download gff for
FMO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RB | 22..1023 | 38..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:24 Download gff for
FMO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RB | 22..1023 | 38..1036 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:24 Download gff for
FMO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9286848..9286937 | 38..127 | 100 | -> | Plus |
| 2R | 9286996..9287627 | 128..759 | 100 | -> | Plus |
| 2R | 9287683..9287962 | 760..1036 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:41 Download gff for
FMO02856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5174353..5174442 | 38..127 | 100 | -> | Plus |
| arm_2R | 5174501..5175132 | 128..759 | 100 | -> | Plus |
| arm_2R | 5175188..5175467 | 760..1036 | 97 | | Plus |
