FMO02857.5prime Sequence
1249 bp (553 high quality bases) assembled on 2008-06-10
> FMO02857.5prime
TAGCATACATTATACGAAGTTATCAATCCACATGATGAAAATGGAGACTG
ACAAAATAATGGACGAAACCAACTCCAATGCACAGGCCTTCACAACCACT
ATGCTGTACGACCCGGTGCGCAAGAAAGACTCATCGCCCACCTACCAAAC
GGAACGGGAACTCTGCTTTCAGTACTTCACCCAGTGGAGCGAGTCGGGCC
AGGTGGACTTTGTGGAGCACCTGCTGTCGCGCATGTGCCACTATCAACAC
GGACAGATCAATGCCTATCTCAAGCCGATGCTCCAGCGGGACTTTATCAC
ATTGCTGCCAATCAAGGGTCTGGATCACATCGCAAAAAACATTTTGTCGT
ACTTGGATGCCGAATCGCTCAAATCATCCGAGCTGGTCTGCAAGGAATGG
CTGCGCGTCATTTCCGAGGGCATGCTCTGGAAGAAGCTCATCGAACGCAA
GGTGCGCACAGATTCCTTGTGGCGCGGACTGGCCGAGCGGCGTAATTGGA
TGCAGTACCTCTTCAAGCCAAGACCGGGCCAGACTCAACGGCCACACTCA
TTCCATCGCGAGTTGTTCCCCAAGATAATGAATGACATTGACAGCATAGA
GAACAACTGGCGGACTGGCCGCCACATGCTGCGCCGCATCAACTGCCGGT
CCGAGAACTCGAAGGGTGTCTATTGTCTGCAGTACGATGACGGCAAGATT
GTCTCCGGACTGAGGGACAACACCATCAAGATCTGGGATCGCACGGATTT
GCAGTGCGTTAAGACCCTAATGGGCCACACTGGATCGGTGCTGTGCCTGC
ACTATGACGACAAGGTGATCATCAGTGGCTCCAGCGACTCCACCGTCCGC
GTGTGGGACGTCAATACCGGCGAGATGGTCAACACCCTTATCCACCACTG
CGAGGTCGGTGCTGCACTTGCGCTTAACAATGGGCATGATGGTAACTGAT
ACATGATCGCTCCATCGTCGTCTGGGACATGAACATCACCAGCGATGATA
CGCTGCGGCGCGTCCTTGTCGGTCACGTGCCGCCGTCAATGGTGGTTGAC
TTTGATTGAAAGTACATCGGTGTCGGCAACGAGGGATCGCACATCAAGGA
TCTGGATCAGAATCTACTGTGGGATTCTGCGTACCTGAAATGGCTCAAGT
CGTGCATCAACTGGCTACATACAAAATGCCTGGTGTCTAGCGCTACTCAT
ATATTCCATAGACGAGTAGGGAAATTGAGAGTCGGCGTCCAGTTTTGTA
FMO02857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1649 | 32..1185 | 4790 | 95.6 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1649 | 32..1185 | 4790 | 95.6 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1649 | 32..1185 | 4790 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21122321..21122593 | 584..312 | 1350 | 99.6 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 311..89 | 1100 | 99.6 | Minus |
| 3R | 32079331 | 3R | 21121701..21122009 | 1069..762 | 960 | 91 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 763..584 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 88..32 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:22 has no hits.
FMO02857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:07 Download gff for
FMO02857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1537 | 24..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:45 Download gff for
FMO02857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1537 | 24..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:45 Download gff for
FMO02857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21121692..21122007 | 764..1079 | 92 | <- | Minus |
| 3R | 21122072..21122251 | 584..763 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 312..583 | 99 | <- | Minus |
| 3R | 21125162..21125384 | 89..311 | 99 | <- | Minus |
| 3R | 21126938..21127001 | 24..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:07 Download gff for
FMO02857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947414..16947729 | 764..1079 | 92 | <- | Minus |
| arm_3R | 16947794..16947973 | 584..763 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 312..583 | 99 | <- | Minus |
| arm_3R | 16950884..16951106 | 89..311 | 99 | <- | Minus |
| arm_3R | 16952660..16952723 | 24..88 | 95 | | Minus |
