FMO02858.5prime Sequence
1220 bp (1066 high quality bases) assembled on 2008-06-10
> FMO02858.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGGAAACCG
GTGACGAGGCTGAGATGCTGGCCGGTTTCACCAGTTCAGATGTTGGCCCC
GAGGCGAAGGAATATAATTTACTGCGCGCCGATGAGGAATACCGCAATGG
CAATGTGGAGCACTCAATTTACTACCAGGTTAAAGCCCAGTTCCAGTCCA
CCGATCTGCGTTACCTTACCGAATCGGCGGAACTGGAAAATCAGCGTCCC
ACCGCAGAGGAGCTGATCAAATCAGCCACTAAACTGGAGAAAAAGGACTA
CAAAAGCAAAAAATTTCTGCAGAACATCATCAAGTACCTCCAGCAAATGG
AGCAGGAGAAACAGCCAAAGAAGCCAATCAACGAAATACCAGAGTATCTA
GACTTCCTGGATGATGTCCAGGATCCTACAGAGGGTCTAACTCGCATTTC
AGAGAAATGCAATAGTCTGCCCCAAGAATGGTGTGTCCTCCAGCTCTGCA
AGAGCTTTAATCCCGCCACCACCTACTCCGTTTTCAATGAGATCATTGCC
AGCGATGGAGCAATATATCTCACTCTGCTCCGACACTGTAGAAGTTCCCA
ACTGGGACCGATTTGCCTGAAAATTTCCAACGAAAATACGGCAAATCTCT
TTCGAGAGTATAGCACTCTGGTGGAAAGATTTAGGCGAGTGGTAACCGTG
GATCCACTCAACATGAAAGGTAAAGAGGCTAAGCAGAAGTATTGGGAGGA
GCTGAATGGTTTTGACACTTTTCAGCAAAAACTACTTGCCGACTTTCGGG
ACATAATATCTCCATATTCCTTTCTGTTCTTTGGCAAAAGATATGACTGC
ACTGTTGTTCAAAAACAAATCAAAGCCACCTATACTCGTGTTGACGATTT
CTGTCTGCTTAATCAATGGGGTACCCACCAACGTGTTTTACTTTCCCAAG
CGGCTCGCATGCCAATCGACTGGAAATCGCAGATCTCAAACTCATCTGCT
ATGAGCTGTCGAGCAACGAAAATGAGATCCAGTCGGCATACGATTGCTTA
AGGTTTGCCAGCGACTGGACGATGGAGGAGCGTCAGCCCCTGGCGAGCAG
AAGATTTCCATCATTCTGTAGTCGAATGACGTCTAGACCACCTCATTGGG
AACAACTAGTCCACGGGAGGATTCTCCCCGCGCCAAATCATGCATTGCCA
TGGGCGCGTGGGTTCCGAAA
FMO02858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sse-RA | 2177 | CG10583-RA | 94..1267 | 38..1199 | 5400 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5661267..5661740 | 778..305 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 5660872..5661209 | 1109..779 | 1400 | 97 | Minus |
| 3L | 28110227 | 3L | 5661802..5661998 | 306..110 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 5662082..5662154 | 110..38 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:55 has no hits.
FMO02858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:42 Download gff for
FMO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 87..1238 | 28..1171 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:13 Download gff for
FMO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 87..1238 | 28..1171 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:13 Download gff for
FMO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5660850..5661209 | 779..1129 | 96 | <- | Minus |
| 3L | 5661267..5661738 | 307..778 | 100 | <- | Minus |
| 3L | 5661802..5661997 | 111..306 | 100 | <- | Minus |
| 3L | 5662082..5662161 | 28..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:42 Download gff for
FMO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5653950..5654309 | 779..1129 | 96 | <- | Minus |
| arm_3L | 5654367..5654838 | 307..778 | 100 | <- | Minus |
| arm_3L | 5654902..5655097 | 111..306 | 100 | <- | Minus |
| arm_3L | 5655182..5655261 | 28..110 | 95 | | Minus |
