FMO02859.5prime Sequence
1235 bp (1049 high quality bases) assembled on 2008-06-10
> FMO02859.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGGACATCAA
GATAACGCCCTTGGGCGCCGGCCAGGATGTGGGCCGCAGCTGTCTGCTGC
TCTCGATGGGCGGGAAGAACATAATGCTCGACTGCGGGATGCATATGGGC
TACAACGACGAGCGCCGCTTCCCGGACTTCTCCTACATAGTGCCGGAGGG
TCCGATCACCAGCCACATTGACTGTGTGATCATCTCGCACTTCCACCTGG
ATCACTGCGGGGCCTTGCCCTACATGTCAGAGATTGTGGGCTACACGGGG
CCCATCTACATGACGCATCCGACCAAGGCCATAGCACCCATCCTCCTGGA
GGACATGCGGAAGGTGGCCGTAGAGCGGAAAGGCGAGTCGAACTTCTTTA
CCACCCAGATGATCAAGGACTGCATGAAGAAGGTGATTCCCGTCACACTT
CACCAGAGTATGATGGTGGACACGGACCTTGAGATCAAAGCCTACTATGC
AGGCCATGTCCTGGGCGCCGCCATGTTCTGGATCAAGGTGGGCTCCCAGA
GCGTTGTCTACACGGGGGACTACAACATGACTCCAGACAGGCATCTGGGA
GCCGCCTGGATAGACAAGTGCCGGCCGGACTTGCTGATCTCCGAGAGCAC
CTACGCCACTACCATTAGGGACTCGAAGCGGTGTCGCGAGAGGGACTTCC
TCAAGAAAGTTCACGAGTGCGTGGCTAAGGGCGGCAAGGTTTTAATCCCT
GTTTTTGCCCTGGGTCGCGCCCAGGAGCTGTGCATCCTGCTGGAGACGTA
CTGGGAGCGCATGAACCTCAAGTACCCCATATACTTTGCTCTGGGGTCTT
ACCGAGAAGGCCAATACCTACTACAAAATGTTCATCACCTGGACGAACCA
GAAGATCCGCAAGACCTTCGTTCACCGCAACATGTTCGACTTCAAGCACA
TCAAGCCCTTTGACAAGCCTACATCGACATCCTGGCGCGATGGTAGTGTC
GCCACGCCAGCATGCTGCACGCAGGTCTTTCCCTGCAAATCTCAGAGTGG
GCGCGATGAAAACAACATGTGATTATGCCCGCTACTGGGGTGCAGGAACG
TGGCACAAGAATTCTTCGGTGCCCCAAGAAGGTGATTCGTAACCGGCCCA
AGGTGTCATGGGTCAATTGCCTGGATACCTGACTTCGGCCATGCCAGTGC
CAAGCCATATATGCCACCATTAATTCTAAGACCTG
FMO02859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..1243 | 37..1134 | 5010 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746557 | 250..1042 | 3720 | 99.2 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 37..250 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:51:20 has no hits.
FMO02859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:54 Download gff for
FMO02859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 112..1194 | 29..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:42 Download gff for
FMO02859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1211 | 29..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:03 Download gff for
FMO02859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1211 | 29..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:03 Download gff for
FMO02859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745465..29745683 | 29..250 | 98 | -> | Plus |
| 3R | 29745763..29746552 | 251..1037 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:42 Download gff for
FMO02859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571187..25571405 | 29..250 | 98 | -> | Plus |
| arm_3R | 25571485..25572274 | 251..1037 | 99 | == | Plus |
