FMO02861.5prime Sequence
1231 bp (1043 high quality bases) assembled on 2008-06-10
> FMO02861.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCATACCA
TCGAGGCGGAGATGCCTCTTCCCAGGCCGACAAGCTGAGCGGCATCGTGG
AGGAGAGCGATCTGTACGAAGGGTTCGCCCCGCATGTCGAGACGTCCGAG
ATCAAAACCCTCGACTTCTACAATTTACCAAAGCAAACTGGCAAGGAACC
GGCACTGCGCTCCTACACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGA
AGCGCGACGTGAAGAACATACTCAGGGAGAACTCGTGGCCCATTAACTCC
CCGATCCGAGCCCAGCTATGGCCGATGTTGTGTGGCCAGCACCAGACCAA
ACAGCAAATGCTAGATGGCTTCTACTGGGAGATGGTTCACCAGGTCTTTG
GCACCACGGAGCTGTCGGAGAAGCCGATCATGCTGCCCGCCTTTGTGGAT
GCCACCCACTGTTTGCCCTACCACTTGACCAGCACGGGACGAGCCGTGGC
CGATCGCATCGTGAATGTCCTGGGCTACGACTGCCCCGATATTACCTACA
GTCCAGTATTGTATCCCATTACATCGATACTTTTGCATTTCATGTCGGAG
GAGGAGGCGTACATATGTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGT
ATTCATCAATCAAACCAAACTACAGCACGAAGTCACTTGGAAGACGGTGA
TGCAGATAGCCAAAAAGCACACAAAAAGTGCTACTTCGTATTTCCAACGT
ATTTGCCCGGGCCTGAAGCTAGAACGCATCTTCATGGACTGGTGCTGGTG
GATTCTAGCCGGTCTACCCTTCCAGCATCTGGTGCGGATCATGGACTGCT
ACTTCCACGAGGGCATCAAGGTCCTGTACCGCGTGGCCCTCGTCATACTC
ACCTGTTTCACAAGGAGTGCCAGTCGAACACGAATGGAGTCCGGACAACA
TTAAAAACGACATTGGCAACGCTTTGATCAAGTTCTGCAGAAGATACAGT
GTCGCCAGCGAAGTGCTCATGCCGCGTTAAGTAATAGGGGACTGACTACC
AGTATATTTCTAAGAATATTATCAGACTGAAATGCTACTAAAAGCCCGCT
CCGTGCTCACAGCGATTCGAGCATAATCAATCCGTCCAGGATATCTGGCC
ACTAGTCTAGTTCCAGGTCAATCATGATGTCCACCTGACATTCGAAGAAT
TTGTTGCGCGCGCACGAAAGAGATCTACTCT
FMO02861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43739-RA | 4863 | CG43739-RA | 743..1890 | 40..1171 | 5095 | 97.3 | Plus |
| sky-RL | 4921 | CG9339-RL | 687..1834 | 40..1171 | 5095 | 97.3 | Plus |
| sky-RK | 5158 | CG9339-RK | 951..2098 | 40..1171 | 5095 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20877150..20877477 | 1045..724 | 1295 | 97.3 | Minus |
| 2L | 23513712 | 2L | 20881987..20882194 | 598..391 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882465 | 395..190 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 20903015..20903166 | 191..40 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 723..598 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:07 has no hits.
FMO02861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:44 Download gff for
FMO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-RB | 939..2046 | 33..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:01 Download gff for
FMO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RJ | 760..1867 | 33..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:26 Download gff for
FMO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RK | 946..2053 | 33..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:26 Download gff for
FMO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20877149..20877477 | 724..1046 | 96 | <- | Minus |
| 2L | 20877553..20877677 | 599..723 | 100 | <- | Minus |
| 2L | 20881987..20882191 | 394..598 | 100 | <- | Minus |
| 2L | 20882262..20882464 | 191..393 | 100 | <- | Minus |
| 2L | 20903016..20903171 | 33..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:01 Download gff for
FMO02861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20882262..20882464 | 191..393 | 100 | <- | Minus |
| arm_2L | 20877553..20877677 | 599..723 | 100 | <- | Minus |
| arm_2L | 20881987..20882191 | 394..598 | 100 | <- | Minus |
| arm_2L | 20877149..20877477 | 724..1046 | 96 | <- | Minus |
| arm_2L | 20903016..20903171 | 33..190 | 97 | | Minus |
