FMO02864.5prime Sequence
1231 bp (1049 high quality bases) assembled on 2008-06-10
> FMO02864.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGAGACCGA
GAAAATCGAGGTTCGCGACGTGACTCGCATCGAGCGCATTGGCGCCCATT
CGCATATCCGCGGATTGGGACTGGACGATGTGCTGGAGGCTCGTCTGGTA
TCCCAGGGAATGGTGGGCCAGAAGGACGCGCGCCGTGCCGCCGGCGTTGT
GGTGCAGATGGTTCGCGAGGGCAAGATCGCCGGAAGATGTATCCTATTGG
CCGGGGAGCCTAGTACCGGCAAAACGGCCATTGCTGTGGGAATGGCGCAG
GCTCTGGGCACCGAGACCCCATTCACTAGCATGTCCGGATCGGAGATATA
CTCGCTGGAGATGAGCAAGACCGAGGCTCTGTCACAGGCACTGCGCAAGA
GCATTGGCGTTCGCATCAAGGAGGAAACCGAGATCATCGAGGGCGAAGTG
GTGGAGATCCAGATCGAACGCCCCGCCTCGGGTACCGGACAGAAGGTGGG
CAAGGTCACCCTCAAGACCACCGAGATGGAAACCAACTACGATCTGGGCA
ACAAGATCATCGAGTGCTTCATGAAAGAGAAGATCCAGGCTGGCGATGTG
ATCACCATCGACAAGGCGTCCGGAAAGGTCAACAAGCTGGGTCGCAGCTT
CACCAGAGCCAGGGACTACGACGCCACTGGCGCTCAGACCAGATTCGTCC
AATGCCCCGAGGGTGAGCTTCAAAAACGCAAGGAGGTGGTGCACACTGTG
ACCCTACACGAGATCGATGTTATCAATAGTCGCACCCACGGGTTCTTGGC
CCTGTTCTCCGGCGATACTGGAGAGATCAAGCAGGAGGTTCGCGATCAGA
TCAACAACAAGGTTCTCGAGTGGCGCGAGGAGGGCAAAGCTGAGATAAAT
CCGGGAGTACTCTTCATAGACGAGTGCACATGCTGGACATTGAGTGCTTC
TTCTTCCTGAATCGGCGCCCTGGAGTCGGAAATGGCTGCGGTGGTGGTGA
TGGCACCAACCGCGGCATCACTCGTATTAGGCACTAACTATCGCAGTCCG
CACGGCATACCCATTGATCTACTCGATCCATGATCATCATACGCACTGTA
CGTATTCGAGAGGAGCTAGGAAATTCTAAGAATCCCCTGCAGGAGGAGGA
CTGCACTGATCGATTGCTGGAACATTCTTACCGCCGATCGCCACAGAATT
ACAGTGTGTGACGCTAGTGACCAATCCAAAC
FMO02864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rept-RB | 1707 | CG9750-RB | 176..1304 | 37..1155 | 5220 | 98.1 | Plus |
| rept-RC | 1714 | CG9750-RC | 118..1246 | 37..1155 | 5220 | 98.1 | Plus |
| rept-RA | 1772 | CG9750-RA | 176..1304 | 37..1155 | 5220 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19255515..19256583 | 37..1101 | 5040 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:46 has no hits.
FMO02864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-06-10 14:37:57 Download gff for
FMO02864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9750-RA | 162..1300 | 29..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:05 Download gff for
FMO02864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rept-RA | 170..1308 | 29..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:26 Download gff for
FMO02864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rept-RA | 170..1308 | 29..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:26 Download gff for
FMO02864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19255509..19256647 | 29..1160 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:05 Download gff for
FMO02864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19248609..19249747 | 29..1160 | 97 | | Plus |
