FMO02866.5prime Sequence
1254 bp (1028 high quality bases) assembled on 2008-06-10
> FMO02866.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCTTGCGACA
ACGCCAAAACCTCTTCGGATATCGAGCATGTGGATTGGAATTCCGGCCAG
CACTATGCGAATGTCAGATTCGGTTCGGGCAGCAGCCAGGCATCGCAGAA
CAGCGGCGACATCTGCCGCATCTGCCACTGCGAGAGTGATCCGCAGAATC
CGCTGCTCACGCCGTGCTATTGCTCCGGCAGTCTGAAGTACGTGCACCAA
GCGTGCTTGCAGCAATGGCTCACCGCCTCCGAGACGAACTCCTGCGAGTT
GTGCAAGTTCCCCTTCATCATGCACACCAAGATCAAACCCTTCAACGAGT
GGCGCAGCCTTGACATCTCCGGCATTGAAAGGCGGCGGCTGTGCTACTCC
GTGCTGTTCCATTGCGCCGCAGCCCTGTGCGTCATCTGGTCCCTGTGTGT
GCTCATCGAGCGGGCCGCCGACGATGTCCAGCGTGGCCTAATAGACTGGC
CCTTCTGGACAAAGCTGGCCGTTGTCACCGTGGGCCTTACCGGCGGAATA
GTTTTTATGTATATCCAGTGCAAGGCATATCTTCACCTCTGTCACCGTTG
GAAAGCACGCAACAGAATTCTACTGATTCAGAATGCTCCAGAAAAGATAC
ATCCAGTGGCACCTCCATCCCCAGTGGCCGCCCATCATCAGCACTTCAGT
GAGCCACTGGCTCATGCCGGATCGACGAGCGGAGCAGTGGAGATCAATGC
CAGCGGTGCAGCCGGAGGATACTGTGCCCACGAGGCAAACTGTGCATCAA
TGGATAATGGTGGCGGCGGTGCCGAAATGGGTCTACATCAGCAATGCAGC
GCCTACTAATGCCTCGCCACATCATATGCTTCAAATGGCCGCTGAACTAG
AGGTGCCGCACAGCAGCAGCAGTGCCTGCACGCAGACGAGGACGGACATG
GCACCAGCGGCACCAGCAAATGCAGCAGAGCGGCCAGCAATTGGGCCAGT
GCGGTGGCCGCCAATATCGAGTGCTCGCAGTCACAGTACAATTACGATCG
CGGACTGGGCCCTCGATGATGTGGTCTCGCAGAATCTCATCATTCGGACC
TGTCTTCAAGGAATCGGGCAGCATGACCGCCCTTCACAGACTTCAACCAA
ACGGGCTGGAACATTCGGAGGCCAGTCCCGGTCTTGCACGGATCCTGTGC
CCTGATTACAGGCAGAGAATTCTCTAGGTGGCCGTGCGCAATCTTTCTCA
CTCG
FMO02866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4080-RB | 3453 | CG4080-RB | 642..1779 | 38..1171 | 5215 | 97.9 | Plus |
| CG4080-RA | 2771 | CG4080-RA | 642..1779 | 38..1171 | 5215 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9388559..9389122 | 1171..612 | 2050 | 95.2 | Minus |
| 3L | 28110227 | 3L | 9390567..9390801 | 349..115 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 9390281..9390427 | 494..348 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 9390002..9390124 | 615..493 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 9398507..9398586 | 117..38 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:51 has no hits.
FMO02866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:58 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:14 Download gff for
FMO02866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1752 | 38..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:01 Download gff for
FMO02866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1752 | 38..1145 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:01 Download gff for
FMO02866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9390567..9390798 | 118..349 | 100 | <- | Minus |
| 3L | 9398507..9398586 | 38..117 | 100 | | Minus |
| 3L | 9388586..9389118 | 616..1145 | 96 | <- | Minus |
| 3L | 9390002..9390122 | 495..615 | 100 | <- | Minus |
| 3L | 9390281..9390425 | 350..494 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:14 Download gff for
FMO02866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9381686..9382218 | 616..1145 | 96 | <- | Minus |
| arm_3L | 9383102..9383222 | 495..615 | 100 | <- | Minus |
| arm_3L | 9383381..9383525 | 350..494 | 100 | <- | Minus |
| arm_3L | 9383667..9383898 | 118..349 | 100 | <- | Minus |
| arm_3L | 9391607..9391686 | 38..117 | 100 | | Minus |
