FMO02867.5prime Sequence
1240 bp (1047 high quality bases) assembled on 2008-06-10
> FMO02867.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAGCATCACGT
TTTTGTGCAGCAAGTCGGGCCACAACACCAACAACAACAGCATTAATAGT
AGCAATAACGATGTTCCAAAAGGGGCAAAAGCGAACTCAGCATTTGCAGC
CGCATCCGCCGGTTTACTAACCATCGCAAACCACCAGCAGCAACAGCTAC
TTCAGCAACCACATCAACAGCAGCAGCAACAACAACAACAGCATCATCAG
CAGTCAAAGGTTAAGGCTATAGCAGCCAAAACCAATGGTCACATCGATGA
CCGTTCACTCTCGGATGTCACAGAGCAACTCTATGTGGATCCGTATGCCG
ACCTAAGCAATGGCTTGCCCGGGGATCTCAACTGCTGTCCGGCCTCGCCC
ACCACAGTGCCTGCTAAAGCATCGTTGGATTCGCCTCTTAAACGTTCCGG
TAGGAGACAGCGAACCACATCCATTGGCAACCAGACCACCACAGCGAATC
CGTCCGAATGCATCATACGCGCAAATAACCGCACGATCTACACGGCCGGA
CGACCGCCGTGGTACAATTGTGCTGGGCAACAGGTGGAGCCCTTCGTCAT
AGGAATCTGCGGCGGTAGTGCCTCTGGCAAGACCACAGTGGCTGAGAAAA
TCATCGAAAGCCTAGACGTTCCATGGGTAACACTGTTGTCCATGGACTGT
TTCTACAAGATCCTTAATGAGAAACAGCATGAGCAGGCCCTGATCAACGA
ATATAACTTCGATCACCCGGATGCCTTCGACATCGAGCTGCTGCTGGACG
TGCTCACCAAGCTGAAGGAGGGCCGAAAGGTGGAAGTTCCTGTCTATAAT
TTTGTGACACATGGTCGTGAGAGCCAAACGAAAACCATGTACGGGGCCAA
TGTGATCATCTTCGAGGGTATTCTTACCTTTCATAGTCCTGAAGTACTTA
AATTGCTAGACATGAGATATTTGTGGACCCAGATCCCGATATTCGTCTGG
CCAGGCGGTTAAGAAGGGACATCTCCTCAGCGCGACGAGACCTCAAGGCG
TGCTGAAGCATACCTTATATGTAGCCCTCCTATTGCATACATAGCTCCAA
CATGCCATGCGATATCATTGTTCCTCGTGGGAGGCACAACAGGTGCCATC
CATCTCTATTTGTCAGACATCACCAGCTGCACTGCCGATTTAAGCCTGGC
CGAACTCTGGCCAAATCTCTCACAAGAACACACCCCATGT
FMO02867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k01209-RD | 2284 | CG4798-RD | 311..1512 | 35..1214 | 5240 | 97 | Plus |
| l(2)k01209-RC | 2380 | CG4798-RC | 407..1608 | 35..1214 | 5240 | 97 | Plus |
| l(2)k01209-RB | 3254 | CG4798-RB | 1281..2482 | 35..1214 | 5240 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17423656..17423964 | 295..603 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 17424196..17424506 | 708..1017 | 1490 | 99.4 | Plus |
| 2R | 25286936 | 2R | 17421687..17421946 | 35..294 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 17424026..17424134 | 601..709 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2491 | 38..252 | 337 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6948 | 57..258 | 279 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2583 | 31..269 | 244 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..7055 | 31..245 | 162 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1588 | 76..151 | 124 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1150 | 57..111 | 122 | 69.1 | Plus |
| BS | 5142 | BS BS 5142bp | 1977..2071 | 38..134 | 120 | 59.8 | Plus |
FMO02867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:58 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:35 Download gff for
FMO02867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RB | 1281..2497 | 35..1232 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:13 Download gff for
FMO02867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RB | 1281..2497 | 35..1232 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:13 Download gff for
FMO02867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17421687..17421946 | 35..294 | 100 | -> | Plus |
| 2R | 17423656..17423963 | 295..602 | 100 | -> | Plus |
| 2R | 17424028..17424134 | 603..709 | 100 | -> | Plus |
| 2R | 17424198..17424505 | 710..1016 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:35 Download gff for
FMO02867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13309192..13309451 | 35..294 | 100 | -> | Plus |
| arm_2R | 13311161..13311468 | 295..602 | 100 | -> | Plus |
| arm_2R | 13311533..13311639 | 603..709 | 100 | -> | Plus |
| arm_2R | 13311703..13312010 | 710..1016 | 99 | -> | Plus |
