FMO02873.5prime Sequence
1266 bp (495 high quality bases) assembled on 2008-06-10
> FMO02873.5prime
CGTATAGCATACATAATACGAAGTTATCAATCCACATGGACACGAACGCT
GGGGAGTCGCTGGGAGCATCGCCGCCCTCGAGCAATGAGGCAGCGGCGGG
ATCACAGTCCCAGAGCGATGCCTCCGAGGAGGAGGAGTATCTGGACAACA
ATATCGAACTGAGGGGCTATCTCAGCAAGTGGACGAACTACGTCTATGGA
TGGCATCCACGCTACATATTCCTGAAGGATGGTACACTCTCCTACTATAA
ATCCGAATCGGATTCGGATTTCGGGTGCCGCGGACCCTTCAACCTGACCA
AGGCCACCATTAAGGCCCATGAGTCCGACGAGCTCCGATTCTATGTTGTG
GTGAACAACTTAAATAACTGGTGCCTGCGGGCATAGACCAGCGAGGACCG
CATGCACTGGGTGGATGTGCTGCAACTGTACAAGGCGGACTCCGGCAGCA
CGGACACCACTTCCTTGCTCCGCCATGGCAGTACCATGAGCCTGCAATCG
AACACTATCTCGCTGACCAGCGGAGGAAGCCTAAAGAAGACGCAGCGCAA
CCTGCGCGAAAAAAGTCGGCGAGCTGGAGACCTTTAAGGATATACTATTT
GGACAGATCGAGACTCTGCAGCGATACTTTGATGCCTGCTCGGAGGTGAA
CAAAAACAATGCGCAACCACTGGACCTGGGCGACTGTCTGAAGTCCATCG
ATTTCGAGGGCGAATCCATCACGTTTCGGGCCACAACGTCTGGCGTGCTA
ACCACCCTGCAGCTTTGCCTATATATCATCGCCGAGAGCGATGAGTCATG
GAAACGGATCTGGAGCGTGAAATAGATAAGCGTCGACGTTCTGAGGACTA
AAGCTAAAGCTCACGGATGACGTTGAGAAAATGAGCGTCCATCGTATCCT
GGCCCAGATTCGAGGAGGGTCCACATTCCACATGCCCGAGGATGAAGTTC
TTCATGCGGTCGAAACGGGCCTGGACCAAAATCGAGGAGGACATGCAGCT
GACTCAAGCTTAAGCTGCAGGTCCCGGATCTCCCCGACCCTGATAACGGT
TCCACCGATGCGGTGGCCGAAGGCGAAGGAAGGCCGGCGAGGGTCGGGAC
GGGGTGCGGGAGGCACCAGCTGGCCCTGGGTGTCCGGAATCGATCCGCGG
TGTGCAGTGACCACTGGCCTACGCCGGCTAGGCCTTGGCAGGAACGGTCC
ATCGAGTGTATATCTGTGCCGCGCAAAGGGGGAGAATATCAAAGTGGCTC
TACACACCCCTGAGCA
FMO02873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cert-RC | 2394 | CG7207-RC | 31..1153 | 36..1156 | 4435 | 94.3 | Plus |
| cert-RA | 2557 | CG7207-RA | 194..1316 | 36..1156 | 4435 | 94.3 | Plus |
| cert-RB | 1825 | CG7207-RB | 342..584 | 913..1156 | 515 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8287827..8288222 | 709..313 | 1845 | 98.2 | Minus |
| 3L | 28110227 | 3L | 8289169..8289448 | 315..36 | 1280 | 97.1 | Minus |
| 3L | 28110227 | 3L | 8287611..8287759 | 854..707 | 605 | 95.3 | Minus |
| 3L | 28110227 | 3L | 8284130..8284295 | 1076..913 | 320 | 86.3 | Minus |
| 3L | 28110227 | 3L | 8287319..8287374 | 910..856 | 185 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:47 has no hits.
FMO02873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:40 Download gff for
FMO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cert-RA | 243..1253 | 36..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:37 Download gff for
FMO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cert-RA | 194..1204 | 36..1042 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:37 Download gff for
FMO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8284165..8284293 | 915..1042 | 91 | <- | Minus |
| 3L | 8287314..8287374 | 856..914 | 91 | <- | Minus |
| 3L | 8287609..8287757 | 709..855 | 93 | <- | Minus |
| 3L | 8287828..8288220 | 315..708 | 98 | <- | Minus |
| 3L | 8289170..8289451 | 34..314 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:40 Download gff for
FMO02873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8277265..8277393 | 915..1042 | 91 | <- | Minus |
| arm_3L | 8280414..8280474 | 856..914 | 91 | <- | Minus |
| arm_3L | 8280709..8280857 | 709..855 | 93 | <- | Minus |
| arm_3L | 8280928..8281320 | 315..708 | 98 | <- | Minus |
| arm_3L | 8282270..8282551 | 34..314 | 96 | <- | Minus |
