FMO02874.5prime Sequence
1254 bp (1052 high quality bases) assembled on 2008-06-10
> FMO02874.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGCGCAATGT
GCTCGAGAGCAGCCTGCTGGGCGCCGGCTTCAGCATCATCTTTCAGATAC
TGTGCCGCATCCTCACTTTCGGCATCAACGCGTACATCGTGCGACATGTG
GGCCGCGAGGTGTTGGGCATTATGAATGTCCGACTGCTGCTTCTGGAGAG
CACCCTGCTCTTCCTCTCCCGCGAGGCCATCAACCGGGCGGCCCTGAGCG
CCAATGCCCAGCAGGGCGATCGCTGCTCCTGGGCGCAGCTGATCAACCAG
ATGTGGCTCACGGTTCCCATTTGCGCTGTTTTGTGTGCTCCTTGCCTATA
CATTTGGCTAAACTGGCTGTCGGCGGTGGACGCCATCTACGCCTCGCAAT
ACGAGTTCGCCTGCTATGCCGTGGCCTTTTCCTGCGTCCTGGAATTGATG
GCCGAGTCCGCGGTGTTTGTCGCCCAGGTCTTTTGCTTTGTCAAGCTTAA
GATCCTGCTGAATACGCTGCACATCCTGGTGCGCTCGGCCATCTTCCTGT
GGATTGTCACCGGTGATCGCAGTGCGGCAATCAATGCATTTGCGATTGCC
CAACTATCCAGCGCAGTGACCATTGTCCTGGGCCAATATGGCTTCTTTTA
CTTCTATCTGAAGGGCTTCAAGGATTTCGTGACCCAGCAGGCGAAAAAGA
AACCAGTGGCTCCAAAAGCCTGGCAGGTCTCACTGTACGAGCACATGGAT
GACTTCCCCTTCAAGCAGCTGAGCGACTTCCTGCCCGGCGTGATGTTCAA
TCCAAATGGAAAGCATTTCAACCGGGAACTGCAAACGCTAACCCTCAGCT
TTGTGAAGCAGGGCGTGCTGAAGCAATCCTCACCGAGGGCGAGAAGTACG
TGATGTCGTGTCGCCTGTGCTGAGCTTCGGGAGCAGCCACCTACGATGTG
GTCAACAATTTGGGCAGCATGGCGGCCCGCTTCATCTTCCGACCCATCGA
GGACAGTTCGTACTTTTACTTCACGCAGACGCTATCCCGGGACATCAAGC
TGGCAGCAGCGCAGGAGCGCGTCCGTCAGGCGAGCAAGGTCTGAATATCT
GCTCTTGGAGTTGAGCTCCATGACCTGATCGCCCTTCCCCTTGGGACAGG
CTACTCGTACCAGTGTCGTCCGCTTTACGGCGCTGGATTTCTGGCTTGCG
GAATGACGAAGCCTCTGCCAGGCCAGTGCTCTTGTGAATCATATACTGCT
CTGA
FMO02874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 141..1319 | 37..1202 | 5275 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5693759..5694622 | 1161..308 | 3610 | 97.5 | Minus |
| X | 23542271 | X | 5694691..5694908 | 312..95 | 1090 | 100 | Minus |
| X | 23542271 | X | 5695006..5695065 | 96..37 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:52 has no hits.
FMO02874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:33 Download gff for
FMO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 136..1296 | 31..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:24 Download gff for
FMO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 136..1296 | 31..1182 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:24 Download gff for
FMO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5693738..5694618 | 312..1182 | 97 | <- | Minus |
| X | 5694692..5694906 | 97..311 | 100 | <- | Minus |
| X | 5695006..5695070 | 31..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:33 Download gff for
FMO02874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5587771..5588651 | 312..1182 | 97 | <- | Minus |
| arm_X | 5588725..5588939 | 97..311 | 100 | <- | Minus |
| arm_X | 5589039..5589103 | 31..96 | 96 | | Minus |
