FMO02876.5prime Sequence
1220 bp (1079 high quality bases) assembled on 2008-06-10
> FMO02876.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGAAGCTTA
ACCGTGTTCGCCATCTGCGAACGACGTACAAGCGCTGTTTGTCCGGCCAG
TCGCAGCTGCAGCTGAATAGTACGGACGCAGAGCCGGCATATCCGGAGAT
TCAGGATCTGTCCTTCAAGGCGCGCAAGCAGAAGGATGCGGCCAACTGGC
ACGAGGAAATCCGGCAGGTGCCGACGGTGGAGGAGAAGATGATCAAGATC
AATATGCCCCGCTATTACGGCTTCAAGGTGGTCGACTTCAACGACTCGAA
AATCCCCTACAATGCACTGCCGCTCACGCAACATTATACGCGCACAGTGC
TCGAGGATTTGCCATCTGAAACGGATAAGAAGGCACAGGCTAAGGACTCC
GAGCAGGAGCAGGAGCAGCCGAGCGTGGATGGTCTTTTCAAGGCGGCTCG
CGGGGATGTTATTGATGCCCTCGAGTTTGCCCACGACTACTACAAGCATC
TGGAAAAGCAACACAACTCTGCCGAATCGAACCCCGTTGAACGTGAGCGC
ATCCTAACGCAGATCATTGTAGAACAGCTGAACAGAGCTCTGCTGCAGTC
GCTCAGCGAGGAGTACAAGCACCTGGATGAGCTCGATGTCGACTACAATC
CACGCCACGAAGCGTTCTGGGCCGTTGGCGGCGTAGATCCTCCCAAGAAC
GTGCAGAAATCGAAGAAGGGCCGGGAATGGCAAAAGGATATGGCAAACGA
GAGCGTTGATCGGATGGTTCAGTATACGGGAGCGCCGTATCTTGCCCTAC
GCCATCGCAAGCAATTGACGCCGTGGAAAACGGAAGCGGAAAGCGAAAAC
CTCGAGCTGAGCAAACAGCTGCCCCGTTTCAAGCACGACCCGCGAACCCT
CGGCTACAGCACCAAGCATCAGCACGCCACCAATGTGCCAGGCTATTGGC
CCAAAGGAATGAGATACTTCGGCCTGCTCTCATTTCATCGCGTGCACACC
TGCAGATCGTCGAATCGTTCGGCGAGCAGATCAGCTGAGCATTGCATTCG
CTGGCGATAAATCGTCATACGCCTGGCTTTGGCCCAGGCGACTACATTGC
TCAACCTACACGACCTGACCTATCCATGAAACTTAACTGTGATCCGACGC
AGGAATGACCTTTAGAATTACAGCTAAATCCTGCTGCGTGACGGACCAAC
CATGGCGAAAATCTCGTGGT
FMO02876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 125..1253 | 37..1144 | 5085 | 97.9 | Plus |
| mRpS30-RA | 1829 | CG8470-RA | 125..1253 | 37..1144 | 5085 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15786794..15787401 | 496..1091 | 2500 | 97.5 | Plus |
| X | 23542271 | X | 15786171..15786630 | 37..496 | 2300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:10 has no hits.
FMO02876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:05 Download gff for
FMO02876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 114..1208 | 24..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:07 Download gff for
FMO02876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 114..1208 | 24..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:07 Download gff for
FMO02876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15786160..15786629 | 24..495 | 98 | -> | Plus |
| X | 15786794..15787389 | 496..1080 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:05 Download gff for
FMO02876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15680193..15680662 | 24..495 | 98 | -> | Plus |
| arm_X | 15680827..15681422 | 496..1080 | 98 | == | Plus |
