FMO02878.5prime Sequence
1217 bp (1057 high quality bases) assembled on 2008-06-10
> FMO02878.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTCGGTTATTA
TTCTCTTAGCCCTGGTGGCTTTCTGCCACGCAGCACCTCTGGATGTCAAG
GAGTCTACCTCTGAGGAGCTCTCTAGGCCCAGTCCCATCAGCCCCGATGT
GCTCGTTGATCCCAAGCCCACCGCCAAGGTAGTCTTGCTGAAGGATGCTC
CCGTCCTGAATCGCCAGAGGCGTAATGAACCCAAGAAGCCCGACAGCGTG
GAGGCCCACGAACAGCTGCATCACTCGCAGCCGGCCGTTCCTATTCATGA
CCAGAAGCCTTCTCCGGCTGGGCCACAGGACCACAAGCGCAAGAGGGAAG
CTCACCACGAGGAGGGTCACCATGGTGACGATGCAGTGCCCCAGAAGGAG
GAAGTGAAGCAAGCTCCCGAGGACCATGACGCCAAGAAGGAAAAGAGAGA
GGCTCACCATGAGGAGGGTCACCAAGACCATGAGGCTCCTCATAAGGAGG
AAGTGAAGCAGGCCCCCGAAGCTCATGATGCCAAAAGGGAAAAGCGAGAG
GCTCACCACGAGGAAGGCCACCATGGTGATGATGCAGCTCCACATAAGGA
GGAAGTGAAGCAGGCTCCCGAAACACATGAGGACAAGAAGGAAAAGAGGG
AAGCTCACCACGAGGAGGGCCACAAGGATGAGGCAGGTGATCGTCCTCAG
GTGGAGGATCTTTCGCTGCCCCATGCCCTGCCCGCTGTGGCCCACACCGC
CGAGCTGCCCAAGAAGCAGGAAAAGCGCGAGACTGTGGAGAAACCCGACA
GCGTGAAGGCCCGTGAGTCGCTCCAGCACAATCCCCAGCGATCCCAGGAG
CTCCACAAGGCCATCGAATCTCTGGCCCGGTGGAAAGGCGCCGGAACAGC
GTCACCAGCGCGATATTCCCGTGCCCACGCAAACCAAAGCCACCAACACC
ACCGATCTCCCATCCACACCAAATCGGAGCTGGAAAGCACACTCCGTCCA
TCACAATCTTCCACAATCCCCAATCCATTCCCGTGGCCGAGCTCTTCGAG
AAGAACAGCACGCGATAAAGTCCACTTCCAGTCCGAGGAAAGCAGGAAAA
GCTAAGCGCAAGCTTTCTTAGACATTCGTGGCGCGGGCCAGGTAATGGCT
ATCTAATCCATATTAAATCTAAATCCAAACTAGCCATAGGAGAAATCCTG
TGCTCGTGAAACATATA
FMO02878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6409-RB | 1544 | CG6409-RB | 368..1445 | 34..1106 | 5055 | 98.6 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 36..1113 | 34..1106 | 5055 | 98.6 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 675..905 | 443..673 | 465 | 80.8 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 777..1007 | 341..571 | 465 | 80.8 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 343..573 | 443..673 | 465 | 80.8 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 445..675 | 341..571 | 465 | 80.8 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 885..1007 | 350..472 | 345 | 86.3 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 684..806 | 551..673 | 345 | 86.3 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 352..474 | 551..673 | 345 | 86.3 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 553..675 | 350..472 | 345 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10880812..10881862 | 1094..47 | 4800 | 98.2 | Minus |
| 3L | 28110227 | 3L | 10881236..10881466 | 571..341 | 410 | 80.3 | Minus |
| 3L | 28110227 | 3L | 10881338..10881568 | 673..443 | 410 | 80.3 | Minus |
| 3L | 28110227 | 3L | 10881236..10881358 | 472..350 | 345 | 85.4 | Minus |
| 3L | 28110227 | 3L | 10881437..10881559 | 673..551 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:10 has no hits.
FMO02878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:10 Download gff for
FMO02878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6409-RA | 31..1115 | 29..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:16 Download gff for
FMO02878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6409-RA | 31..1115 | 29..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:16 Download gff for
FMO02878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10880796..10881862 | 47..1109 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:10 Download gff for
FMO02878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10873896..10874962 | 47..1109 | 98 | <- | Minus |
